Factsheet for Bra013298.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78842	Canola	plastid	98.45	98.45
Bra012603.1-P	Field mustard	cytosol	71.43	93.89
AT4G18350.1	Thale cress	cytosol, plastid	87.61	87.31
Zm00001d027690_P001	Maize	cytosol	9.81	74.03
Zm00001d008638_P001	Maize	cytosol	10.33	73.17
Bra001552.1-P	Field mustard	cytosol	49.4	72.47
Zm00001d023690_P001	Maize	cytosol	16.18	71.76
Bra032359.1-P	Field mustard	plastid	66.27	65.48
Os12t0617400-01	Rice	cytosol	31.5	64.66
Bra021558.1-P	Field mustard	plastid	65.58	63.71
PGSC0003DMT400039054	Potato	plastid	63.51	63.62
Solyc08g016720.1.1	Tomato	plastid	63.17	63.17
Bra027336.1-P	Field mustard	plastid	64.72	62.98
VIT_10s0003g03750.t01	Wine grape	plastid	63.86	61.32
Bra008358.1-P	Field mustard	plastid	61.79	61.16
KRH58642	Soybean	plastid	61.62	60.88
Zm00001d031086_P001	Maize	plastid	59.38	60.63
Bra035033.1-P	Field mustard	plastid	62.82	60.63
GSMUA_Achr4P22870_001	Banana	plastid	61.96	59.9
KRH42549	Soybean	plastid	60.41	59.59
TraesCS5A01G374000.1	Wheat	plastid	60.41	59.39
TraesCS5D01G383500.1	Wheat	plastid	60.76	59.33
Zm00001d033222_P001	Maize	extracellular	61.27	58.94
TraesCS5B01G375900.1	Wheat	plastid	60.24	58.82
GSMUA_Achr6P31180_001	Banana	plastid	60.93	58.71
GSMUA_Achr2P12950_001	Banana	plastid	59.38	58.57
Os03t0645900-00	Rice	plastid	61.1	58.39
HORVU5Hr1G008050.1	Barley	plastid	60.76	58.15
EER93751	Sorghum	plastid	61.1	58.1
Zm00001d013689_P001	Maize	plastid	60.07	58.07
GSMUA_Achr7P01250_001	Banana	plastid	60.24	58.04
GSMUA_Achr4P31460_001	Banana	plastid	60.07	57.88
GSMUA_Achr5P02570_001	Banana	plastid	60.41	57.54
TraesCS5B01G029300.1	Wheat	plastid	60.76	57.49
Zm00001d041319_P001	Maize	plastid	59.72	57.45
TraesCS5D01G038800.1	Wheat	plastid	60.41	57.07
Zm00001d018819_P001	Maize	plastid	56.28	57.07
OQU88453	Sorghum	plastid	56.28	57.07
HORVU5Hr1G054970.1	Barley	cytosol	59.55	56.91
Zm00001d007876_P001	Maize	plastid	55.94	56.52
Os07t0154100-01	Rice	plastid	55.77	55.67
Zm00001d000095_P001	Maize	cytosol	15.66	55.49
TraesCS2D01G251600.1	Wheat	plastid	55.42	55.33
HORVU5Hr1G092850.2	Barley	plastid	60.59	54.66
TraesCS2B01G268400.1	Wheat	plastid	55.94	54.53
HORVU5Hr1G044510.1	Barley	cytosol	55.94	54.17
TraesCS2A01G250600.1	Wheat	plastid	53.87	52.78
Bra015002.1-P	Field mustard	plastid	50.95	50.6
Zm00001d000157_P001	Maize	cytosol	8.95	49.52
Zm00001d023458_P001	Maize	cytosol	11.19	46.1
Zm00001d042076_P001	Maize	cytosol, plastid	31.84	44.05
Zm00001d022623_P001	Maize	cytosol	25.47	39.68
Bra013378.1-P	Field mustard	peroxisome	32.53	37.5
Zm00001d035724_P001	Maize	plastid	39.76	36.38
Zm00001d019813_P001	Maize	plastid	10.84	33.33
Bra020970.1-P	Field mustard	plastid	32.19	32.98
Bra040449.1-P	Field mustard	cytosol	28.06	29.8
Bra007826.1-P	Field mustard	plastid	29.09	28.21
Zm00001d009286_P001	Maize	plastid	12.05	27.78
Bra007825.1-P	Field mustard	plastid	26.16	26.43
Zm00001d033377_P001	Maize	plastid	12.22	25.0
Zm00001d027592_P001	Maize	mitochondrion	17.9	24.41

Protein Annotations

EnsemblPlants:Bra013298.1	EnsemblPlants:Bra013298.1-P	EnsemblPlantsGene:Bra013298	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	SEG:seg	UniParc:UPI0002546082	UniProt:M4D9Y8
MapMan:11.1.1.4	:	:	:	:	:

Description

AT4G18350 (E=5e-280) NCED2, ATNCED2 | NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA01:+:4848154..4849899

Molecular Weight (calculated)

64507.1 Da

IEP (calculated)

5.292

GRAVY (calculated)

-0.214

Length

581 amino acids

Sequence
(BLAST)

001: MVSLLTMSTS GAITYPQAQS DLCMRPIKRQ PKIKCTVHID VTDQPLKRSS FTPRTTATPP PQHNSLRLNI FQKAAAIAID AAERALISHE KDTPLSKTAD
101: PSVQIAGNYF PVSECPVRQF LTVEGTIPDS IDGVYVRNGA NPMFDPIAGH HLFDGDGMVH AIKITNGSAS YACRFTKTER LIQEKRLGRP VFPKAIGELH
201: GHSGIARLML FYARGLCGLV NNQNGVGVAN AGLVYFNNRL LAMSEDDLPY QLKITQTGDL ETVGRYDFDG QLKSTMIAHP KLDPVTKELH ALSYDVVRKP
301: YLKYFRFSPD GVKSPEVEIP LETPTMIHDF AITENFVVIP DQQVVFKLGE MMAGNSPVVF DGGKVSRLGI MPKDATEASE IIWVNSPETF CFHLWNAWES
401: PETEEVVVIG SCMSPADSIF NERDESLKSV LTEIRINLRT RESTRRAMLV DELNLEIGMV NRNRLGRETR FAFLAIADPW PKVSGFAKVD LVTGEIEKYV
501: YGDEKYGGEP FFLPSGSVDG GDNEDDGYIF CHVHDEEKET SELQIINAVD LKLEATIKLP SRVPYGFHGT FVDASELVDQ V

Best Arabidopsis Sequence Match ( AT4G18350.1 )
(BLAST)

001: MVSLLTMPMS GGIKTWPQAQ IDLGFRPIKR QPKVIKCTVQ IDVTELTKKR QLFTPRTTAT PPQHNPLRLN IFQKAAAIAI DAAERALISH EQDSPLPKTA
101: DPRVQIAGNY SPVPESSVRR NLTVEGTIPD CIDGVYIRNG ANPMFEPTAG HHLFDGDGMV HAVKITNGSA SYACRFTKTE RLVQEKRLGR PVFPKAIGEL
201: HGHSGIARLM LFYARGLCGL INNQNGVGVA NAGLVYFNNR LLAMSEDDLP YQLKITQTGD LQTVGRYDFD GQLKSAMIAH PKLDPVTKEL HALSYDVVKK
301: PYLKYFRFSP DGVKSPELEI PLETPTMIHD FAITENFVVI PDQQVVFKLG EMISGKSPVV FDGEKVSRLG IMPKDATEAS QIIWVNSPET FCFHLWNAWE
401: SPETEEIVVI GSCMSPADSI FNERDESLRS VLSEIRINLR TRKTTRRSLL VNEDVNLEIG MVNRNRLGRK TRFAFLAIAY PWPKVSGFAK VDLCTGEMKK
501: YIYGGEKYGG EPFFLPGNSG NGEENEDDGY IFCHVHDEET KTSELQIINA VNLKLEATIK LPSRVPYGFH GTFVDSNELV DQL

Arabidopsis Description

NCED29-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49505]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.