Factsheet for Os03t0645900-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0815700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Os01t0815700-01	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0617400-01	Rice	cytosol	40.3	86.57
EER93751	Sorghum	plastid	86.18	85.76
TraesCS5D01G383500.1	Wheat	plastid	83.39	85.21
TraesCS5A01G374000.1	Wheat	plastid	82.57	84.94
TraesCS5B01G375900.1	Wheat	plastid	82.73	84.54
HORVU5Hr1G092850.2	Barley	plastid	83.55	78.88
HORVU5Hr1G054970.1	Barley	cytosol	78.29	78.29
HORVU5Hr1G044510.1	Barley	cytosol	74.84	75.83
Bra001552.1-P	Field mustard	cytosol	47.53	72.98
CDX82482	Canola	cytosol	47.53	72.98
CDY57471	Canola	cytosol	46.88	71.97
CDX98456	Canola	cytosol	29.44	70.2
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	58.39	70.16
Bra012603.1-P	Field mustard	cytosol	50.49	69.46
CDY39117	Canola	mitochondrion	60.69	66.73
Os07t0154100-01	Rice	plastid	63.49	66.32
GSMUA_Achr5P02570_001	Banana	plastid	65.79	65.57
GSMUA_Achr2P12950_001	Banana	plastid	63.32	65.36
GSMUA_Achr4P22870_001	Banana	plastid	64.47	65.22
GSMUA_Achr4P31460_001	Banana	plastid	64.31	64.84
GSMUA_Achr7P01250_001	Banana	plastid	63.98	64.51
GSMUA_Achr6P31180_001	Banana	plastid	63.65	64.18
Bra027336.1-P	Field mustard	plastid	62.99	64.15
Bra021558.1-P	Field mustard	plastid	62.83	63.88
CDX97576	Canola	plastid	62.5	63.65
CDX98455	Canola	plastid	62.34	63.48
CDY33218	Canola	plastid	62.34	63.38
AT3G14440.1	Thale cress	plastid	62.34	63.27
PGSC0003DMT400039054	Potato	plastid	60.2	63.1
VIT_19s0093g00550.t01	Wine grape	plastid	62.83	62.73
Solyc08g016720.1.1	Tomato	plastid	59.7	62.48
VIT_10s0003g03750.t01	Wine grape	plastid	62.01	62.31
AT1G30100.1	Thale cress	plastid	60.2	62.14
Bra032359.1-P	Field mustard	plastid	59.87	61.9
CDY61838	Canola	plastid	59.7	61.63
CDY26294	Canola	plastid	59.7	61.63
Solyc07g056570.1.1	Tomato	plastid	61.02	61.32
Bra013298.1-P	Field mustard	plastid	58.39	61.1
CDY52448	Canola	plastid	60.36	60.96
CDX88443	Canola	plastid	60.36	60.96
Bra035033.1-P	Field mustard	plastid	60.2	60.8
CDX99475	Canola	plastid	58.06	60.76
CDX78842	Canola	plastid	58.06	60.76
CDY55629	Canola	cytosol, plastid	58.22	60.72
CDY01534	Canola	cytosol, plastid	58.22	60.72
Bra008358.1-P	Field mustard	plastid	58.39	60.48
AT4G18350.1	Thale cress	cytosol, plastid	57.4	59.86
Zm00001d023458_P001	Maize	cytosol	13.49	58.16
CDX98457	Canola	plastid	29.44	56.83
AT1G78390.1	Thale cress	cytosol, plastid	61.02	56.47
Os04t0131800-00	Rice	extracellular	15.46	54.34
KRH45171	Soybean	plastid	11.02	40.61
Os12t0640600-01	Rice	plasma membrane	34.7	39.07
Os02t0704000-01	Rice	plastid	36.51	34.8
Os12t0435200-01	Rice	plastid	32.24	34.03
Zm00001d027592_P001	Maize	mitochondrion	20.23	28.87
Os09t0321200-00	Rice	plastid	22.7	24.21
Os08t0371608-00	Rice	cytosol	20.89	23.39
Os06t0162550-00	Rice	mitochondrion, plastid	21.22	22.55
Os08t0369800-01	Rice	plastid	13.16	20.94

Protein Annotations

MapMan:11.1.1.4	EntrezGene:4333566	ProteinID:ABF97874.1	EMBL:AY838899	ProteinID:BAF12679.1	ProteinID:BAS85471.1
InterPro:Carotenoid_Oase	ProteinID:EAZ27934.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009688	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0045549	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:Os03g0645900
EnsemblPlants:Os03t0645900-00	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	UniProt:Q5MBR5	UniParc:UPI000049E251
RefSeq:XP_015631538.1	SEG:seg	:	:	:	:

Description

9-CIS-EPOXYCAROTENOID DIOXYGENASE 1Carotenoid oxygenase family protein. (Os03t0645900-00)

Coordinates

chr3:+:24959201..24961260

Molecular Weight (calculated)

65654.9 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.172

Length

608 amino acids

Sequence
(BLAST)

001: MATITTPGYA HIQRQHGRCS TTAGRRGASN SVRFSARAVS SVPHAAAASS APAFLPVPFV PGADAPSPSG KSAIGVPKAP RKGEEGKRLN FFQRAAAMAL
101: DAFEEGFVAN VLERPHGLPS TADPAVQIAG NFAPVGETPP ARALPVSGRI PPFINGVYAR NGANPHFDPV AGHHLFDGDG MVHAVRIRNG AAESYACRFT
201: ETARLRQERA MGRPMFPKAI GELHGHSGIA RLALFYARAA CGLLDPSHGT GVANAGLIYF NGRLLAMSED DLPYQVRVTA DGDLETVGRY DFDGQLGCAM
301: IAHPKLDPAT GELHALSYDV IKKPYLKYFY FAPDGTKSAD VEIPLDQPTM IHDFAITENY VVVPDHQVVF KLQEMLRGGS PVVLDKEKTS RFGVLPKHAA
401: DASEMVWVDV PDCFCFHLWN AWEEADTDEV VVIGSCMTPA DSIFNESDDR LESVLTEIRL NTRTGESTRR AILPPSSQVN LEVGMVNRNL LGRKTRYAYL
501: AVAEPWPKVS GFAKVDLATG ELTKFEYGEG RFGGEPCFVP MDAAAATPRG EDDGYILSFV HDERAGTSEL LVVNAADMRL EATVQLPSRV PYGFHGTFIT
601: GDELTTQA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.