Factsheet for AT1G30100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61838	Canola	plastid	93.21	93.21
Bra032359.1-P	Field mustard	plastid	93.04	93.2
CDY26294	Canola	plastid	93.04	93.04
Zm00001d008638_P001	Maize	cytosol	10.19	73.17
Zm00001d027690_P001	Maize	cytosol	9.51	72.73
PGSC0003DMT400039054	Potato	plastid	68.59	69.66
Solyc08g016720.1.1	Tomato	plastid	67.74	68.67
Zm00001d023690_P001	Maize	cytosol	15.11	67.94
VIT_10s0003g03750.t01	Wine grape	plastid	69.27	67.44
AT4G18350.1	Thale cress	cytosol, plastid	66.21	66.9
Os12t0617400-01	Rice	cytosol	31.75	66.08
AT3G14440.1	Thale cress	plastid	65.53	64.44
KRH58642	Soybean	plastid	63.67	63.78
GSMUA_Achr4P22870_001	Banana	plastid	63.84	62.56
KRH42549	Soybean	plastid	61.97	61.97
Zm00001d031086_P001	Maize	plastid	59.76	61.86
GSMUA_Achr6P31180_001	Banana	plastid	62.82	61.36
GSMUA_Achr4P31460_001	Banana	plastid	62.48	61.03
GSMUA_Achr2P12950_001	Banana	plastid	60.95	60.95
TraesCS5A01G374000.1	Wheat	plastid	60.78	60.58
GSMUA_Achr5P02570_001	Banana	plastid	62.65	60.49
TraesCS5D01G383500.1	Wheat	plastid	60.95	60.34
Os03t0645900-00	Rice	plastid	62.14	60.2
TraesCS5B01G375900.1	Wheat	plastid	60.78	60.17
GSMUA_Achr7P01250_001	Banana	plastid	61.46	60.03
HORVU5Hr1G008050.1	Barley	plastid	61.63	59.8
Zm00001d033222_P001	Maize	extracellular	61.12	59.6
TraesCS5B01G029300.1	Wheat	plastid	61.8	59.28
TraesCS5D01G038800.1	Wheat	plastid	61.8	59.19
OQU88453	Sorghum	plastid	57.39	58.99
EER93751	Sorghum	plastid	61.12	58.92
Zm00001d013689_P001	Maize	plastid	60.1	58.9
Zm00001d018819_P001	Maize	plastid	57.22	58.81
Zm00001d041319_P001	Maize	plastid	60.27	58.77
Zm00001d007876_P001	Maize	plastid	57.05	58.43
AT1G78390.1	Thale cress	cytosol, plastid	64.86	58.14
TraesCS2D01G251600.1	Wheat	plastid	56.88	57.56
Zm00001d000095_P001	Maize	cytosol	15.96	57.32
HORVU5Hr1G054970.1	Barley	cytosol	59.08	57.24
Os07t0154100-01	Rice	plastid	56.54	57.22
TraesCS2B01G268400.1	Wheat	plastid	56.71	56.04
TraesCS2A01G250600.1	Wheat	plastid	56.03	55.65
HORVU5Hr1G092850.2	Barley	plastid	60.61	55.43
HORVU5Hr1G044510.1	Barley	cytosol	56.37	55.33
Zm00001d000157_P001	Maize	cytosol	9.51	53.33
Zm00001d023458_P001	Maize	cytosol	12.73	53.19
AT3G24220.1	Thale cress	plastid	50.59	51.65
Zm00001d042076_P001	Maize	cytosol, plastid	32.43	45.48
Zm00001d022623_P001	Maize	cytosol	26.15	41.29
AT3G63520.1	Thale cress	cytosol	33.28	36.43
Zm00001d035724_P001	Maize	plastid	38.54	35.75
AT4G19170.1	Thale cress	plastid	35.99	35.63
Zm00001d019813_P001	Maize	plastid	10.87	33.86
Zm00001d027592_P001	Maize	mitochondrion	19.52	27.0
Zm00001d009286_P001	Maize	plastid	11.54	26.98
Zm00001d033377_P001	Maize	plastid	11.88	24.65

Protein Annotations

MapMan:11.1.1.4	EntrezGene:839889	ProteinID:AAG50855.1	ProteinID:AEE31178.1	EMBL:AK226774	ArrayExpress:AT1G30100
EnsemblPlantsGene:AT1G30100	RefSeq:AT1G30100	TAIR:AT1G30100	RefSeq:AT1G30100-TAIR-G	EnsemblPlants:AT1G30100.1	TAIR:AT1G30100.1
Unigene:At.51834	InterPro:Carotenoid_Oase	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009688	GO:GO:0009791
GO:GO:0009987	GO:GO:0010162	GO:GO:0016020	GO:GO:0016491	GO:GO:0016702	GO:GO:0045549
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	Symbol:NCED5	RefSeq:NP_174302.1	PFAM:PF03055
PO:PO:0007611	PO:PO:0009009	PO:PO:0009010	PO:PO:0009029	PO:PO:0009031	PO:PO:0009046
PO:PO:0009089	PO:PO:0025022	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	UniProt:Q9C6Z1	UniParc:UPI00000482F8
SEG:seg	:	:	:	:	:

Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]

Coordinates

chr1:+:10571310..10573365

Molecular Weight (calculated)

65340.5 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.322

Length

589 amino acids

Sequence
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.