Factsheet for HORVU5Hr1G044510.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G080150.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	HORVU3Hr1G080150.3	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G374000.1	Wheat	plastid	84.0	85.28
TraesCS5D01G383500.1	Wheat	plastid	84.0	84.71
TraesCS5B01G375900.1	Wheat	plastid	84.0	84.71
Zm00001d023690_P001	Maize	cytosol	18.33	83.97
HORVU5Hr1G054970.1	Barley	cytosol	83.5	82.4
Zm00001d027690_P001	Maize	cytosol	10.5	81.82
Zm00001d008638_P001	Maize	cytosol	11.17	81.71
HORVU5Hr1G092850.2	Barley	plastid	84.83	79.04
Os03t0645900-00	Rice	plastid	75.83	74.84
EER93751	Sorghum	plastid	75.67	74.3
Zm00001d033222_P001	Maize	extracellular	74.33	73.84
Zm00001d013689_P001	Maize	plastid	72.67	72.55
HORVU5Hr1G008050.1	Barley	plastid	70.83	70.02
CDX82482	Canola	cytosol	44.17	66.92
Bra001552.1-P	Field mustard	cytosol	44.17	66.92
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	55.83	66.21
CDY57471	Canola	cytosol	43.5	65.91
Bra012603.1-P	Field mustard	cytosol	47.17	64.03
CDX98456	Canola	cytosol	27.0	63.53
CDY39117	Canola	mitochondrion	57.33	62.21
GSMUA_Achr4P22870_001	Banana	plastid	60.17	60.07
GSMUA_Achr2P12950_001	Banana	plastid	58.33	59.42
GSMUA_Achr5P02570_001	Banana	plastid	60.33	59.34
Bra021558.1-P	Field mustard	plastid	58.83	59.03
Bra027336.1-P	Field mustard	plastid	58.67	58.96
GSMUA_Achr6P31180_001	Banana	plastid	59.17	58.87
CDX98455	Canola	plastid	58.33	58.63
PGSC0003DMT400039054	Potato	plastid	56.67	58.62
CDX97576	Canola	plastid	58.17	58.46
GSMUA_Achr7P01250_001	Banana	plastid	58.67	58.37
GSMUA_Achr4P31460_001	Banana	plastid	58.67	58.37
CDY33218	Canola	plastid	58.17	58.36
Solyc08g016720.1.1	Tomato	plastid	56.5	58.35
AT3G14440.1	Thale cress	plastid	57.83	57.93
VIT_19s0093g00550.t01	Wine grape	plastid	58.33	57.47
Solyc07g056570.1.1	Tomato	plastid	57.33	56.86
VIT_10s0003g03750.t01	Wine grape	plastid	57.33	56.86
CDX88443	Canola	plastid	56.83	56.64
Bra032359.1-P	Field mustard	plastid	55.5	56.63
CDY52448	Canola	plastid	56.67	56.48
AT1G30100.1	Thale cress	plastid	55.33	56.37
CDY26294	Canola	plastid	55.33	56.37
Bra035033.1-P	Field mustard	plastid	56.5	56.31
CDY61838	Canola	plastid	55.17	56.2
CDX99475	Canola	plastid	54.33	56.11
Bra013298.1-P	Field mustard	plastid	54.17	55.94
Bra008358.1-P	Field mustard	plastid	54.67	55.88
CDX78842	Canola	plastid	54.0	55.77
CDY55629	Canola	cytosol, plastid	53.83	55.4
AT4G18350.1	Thale cress	cytosol, plastid	53.67	55.23
CDY01534	Canola	cytosol, plastid	53.5	55.06
CDX98457	Canola	plastid	27.83	53.02
AT1G78390.1	Thale cress	cytosol, plastid	57.5	52.51
KRH45171	Soybean	plastid	10.67	38.79
HORVU5Hr1G000320.9	Barley	plastid	31.5	33.33
HORVU4Hr1G006300.1	Barley	cytosol	30.17	32.61
HORVU6Hr1G068720.1	Barley	plastid	33.83	31.57
HORVU1Hr1G000550.2	Barley	cytosol	23.83	24.4
HORVU3Hr1G108100.2	Barley	plasma membrane, plastid	22.67	22.82
HORVU5Hr1G055740.1	Barley	plasma membrane	22.33	20.84

Protein Annotations

EnsemblPlants:HORVU5Hr1G044510.1	EnsemblPlantsGene:HORVU5Hr1G044510	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	ncoils:Coil
PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	SEG:seg	UniParc:UPI000B472840	UniProt:A0A287R034
MapMan:11.1.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:344419301..344421100

Molecular Weight (calculated)

58344.3 Da

IEP (calculated)

4.803

GRAVY (calculated)

-0.151

Length

600 amino acids

Sequence
(BLAST)

001: RNSVPMDGSN ETTRHVLLHS LSPVPLPNQV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXPLIAVP KPPAVERQEK KLNFFQRAAA TALDAFEEGF
101: VANVLERPHG LSRTVDPAVQ IAGNFAPVGE TPPVQALPVT GRIPPFINGV YARNGANPHF DPVAGHHLFD GDGMVHALRI RNGVAETYAS RFTETERLQQ
201: ERALGRPMFP KAIGELHGHS GIARLALFYA RAACGLIDPS RGTGVANAGL VYFNGHLLAM SEDDIPYHVR VTDDGDLQTV GRYDFDGQLE CPMIAHPKLD
301: PATGELHALS YDVIKKPYLK YFYFAADGTK SADVEIPLDQ PTMIHDFAIT ENYVVVPDHQ VVFKLQEMLR GGSPVVLDKE KTSRFGVLPK CAADASEMVW
401: VDVPDCFCFH LWNAWEEEET DEVVVIGSCM TPADSIFNES DECLESVLTE IRLNTRTGES TRRPILALSE QVNLEVGMVN SNLLGRKTRY AYLAVAEPWP
501: KVSGFAKVDL ATGELTKFEY GEGRFGGEPC FVPMDPATSR GEDDGYILTF VHDEAAGTSE LLVVNAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.