Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G186900.1 | Wheat | cytosol | 91.6 | 91.04 |
| TraesCS5B01G180500.1 | Wheat | cytosol | 92.22 | 88.38 |
| HORVU1Hr1G000550.2 | Barley | cytosol | 72.63 | 79.69 |
| OQU89281 | Sorghum | cytosol | 55.83 | 72.53 |
| Os09t0321200-00 | Rice | plastid | 63.45 | 71.58 |
| OQU89285 | Sorghum | plastid | 67.03 | 70.54 |
| Zm00001d020069_P002 | Maize | plastid | 56.61 | 65.12 |
| HORVU3Hr1G108100.2 | Barley | plasma membrane, plastid | 50.08 | 54.03 |
| HORVU4Hr1G006300.1 | Barley | cytosol | 24.88 | 28.83 |
| HORVU5Hr1G000320.9 | Barley | plastid | 24.11 | 27.34 |
| HORVU5Hr1G008050.1 | Barley | plastid | 23.95 | 25.37 |
| HORVU5Hr1G054970.1 | Barley | cytosol | 23.02 | 24.34 |
| HORVU5Hr1G092850.2 | Barley | plastid | 23.64 | 23.6 |
| HORVU6Hr1G068720.1 | Barley | plastid | 23.33 | 23.33 |
| HORVU5Hr1G044510.1 | Barley | cytosol | 20.84 | 22.33 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G055740.1 | EnsemblPlantsGene:HORVU5Hr1G055740 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 |
| PANTHER:PTHR10543:SF30 | PFAM:PF03055 | SEG:seg | UniParc:UPI0002963555 | UniProt:M0XL08 | MapMan:50.1.12 |
Description
No Description!
Coordinates
chrchr5H:+:437153573..437157792
Molecular Weight (calculated)
71967.5 Da
IEP (calculated)
6.212
GRAVY (calculated)
-0.301
Length
643 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSRPPPHH DCRRIGELFV TIRMLKTTAS PPHALRPSRA CYRPAFSLSA RSSASSVTSN PKKSLIRELQ RQLSSRIDNA SRVLKNAPHR LLDVIVDSTF
101: KFTDQILLPS ESNFAPVDEI GGSIEILQIE GEMPEDFPEG VYIRNGSNPL FGALHSTVSV FGESSEIWVE GEGMLHALYF TKIGSASSWS ISYANRYVQS
201: ETLKIEQDRQ KPCFLPAIEG DSAAIIAAYI LNYLRFGKVN KNITNTNVFE HAGRVYAVAE SHQPQEICIQ NLETGNTWDI GGEWDRPFTA HPKVAPGSGE
301: LVIFGSDAKK PFLVVGVVSD DGTKLKHKVD LKLNRSTLCH DIGVTLKYNI IIDIPLTIDI GRLTAGGQLI EFEKEGYARI GIMPRYGDAE SVMWFDVEPF
401: CMFHLINCFE DGDEVVVQGL RSADSVIPGP RLNKQDIVPE RSELTEYDKA MKQGINDKLF SRLFEWRLNL KTKTVLGEYL TGTECSLEFP MINNHYSGVR
501: HSYGYAQIVD SLTRSAGSSE KVLPKYGGFA KLCLDERENT ETWAEDLIKM EIHRLSEDEF CSGASFVPRV GGSHEDDGWI ISFVHNERTN TSQVHIIDTQ
601: KFEGAPVAKI TLPQRVPYGF HGTFVHDNIH GHVNTRLEKN WTA
101: KFTDQILLPS ESNFAPVDEI GGSIEILQIE GEMPEDFPEG VYIRNGSNPL FGALHSTVSV FGESSEIWVE GEGMLHALYF TKIGSASSWS ISYANRYVQS
201: ETLKIEQDRQ KPCFLPAIEG DSAAIIAAYI LNYLRFGKVN KNITNTNVFE HAGRVYAVAE SHQPQEICIQ NLETGNTWDI GGEWDRPFTA HPKVAPGSGE
301: LVIFGSDAKK PFLVVGVVSD DGTKLKHKVD LKLNRSTLCH DIGVTLKYNI IIDIPLTIDI GRLTAGGQLI EFEKEGYARI GIMPRYGDAE SVMWFDVEPF
401: CMFHLINCFE DGDEVVVQGL RSADSVIPGP RLNKQDIVPE RSELTEYDKA MKQGINDKLF SRLFEWRLNL KTKTVLGEYL TGTECSLEFP MINNHYSGVR
501: HSYGYAQIVD SLTRSAGSSE KVLPKYGGFA KLCLDERENT ETWAEDLIKM EIHRLSEDEF CSGASFVPRV GGSHEDDGWI ISFVHNERTN TSQVHIIDTQ
601: KFEGAPVAKI TLPQRVPYGF HGTFVHDNIH GHVNTRLEKN WTA
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.