Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G055740.1 | Barley | plasma membrane | 91.04 | 91.6 |
| TraesCS5B01G180500.1 | Wheat | cytosol | 93.51 | 90.16 |
| OQU89281 | Sorghum | cytosol | 55.8 | 72.93 |
| Os09t0321200-00 | Rice | plastid | 63.52 | 72.11 |
| OQU89285 | Sorghum | plastid | 66.46 | 70.38 |
| Zm00001d020069_P002 | Maize | plastid | 56.26 | 65.12 |
| TraesCS5D01G001900.1 | Wheat | cytosol, golgi | 24.11 | 28.42 |
| TraesCS5D01G002800.1 | Wheat | cytosol | 23.96 | 28.13 |
| TraesCS5D01G383500.1 | Wheat | plastid | 24.11 | 26.22 |
| TraesCS5D01G038800.1 | Wheat | plastid | 24.11 | 25.37 |
| TraesCS5D01G002900.1 | Wheat | plastid | 23.96 | 25.24 |
| TraesCS2D01G013000.1 | Wheat | cytosol | 23.34 | 25.04 |
| TraesCS2D01G251600.1 | Wheat | plastid | 22.41 | 24.91 |
| TraesCS6D01G251800.1 | Wheat | plastid | 23.49 | 23.79 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G186900.1 | EnsemblPlantsGene:TraesCS5D01G186900 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF30 | PFAM:PF03055 |
| SEG:seg | MapMan:50.1.12 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:288585957..288589884
Molecular Weight (calculated)
72555.2 Da
IEP (calculated)
6.629
GRAVY (calculated)
-0.360
Length
647 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNRPPHDC RRIRLCHYQK FRMLKATTSP PNALRPSRAY YRPAFSLSAT TSSSSLTSNP KKSLIQELRR QLSSTIDDAS QVLKNAPQKL LDAIVDSTFK
101: FTHQALLPSE SNFAPVDEIG GSIEILQIEG EIPKDFPEGV YIRNGSNPLF GALHSTVSVF GESSEIWVEG EGMLHALYFT KTGSASSWSV SYDNRYVQSE
201: TLKIEQDRQK PCFLPAIEGD SAAIIVAYIL NYLRFGKVNK NITNTNVFEH AGRVYAVAES HQPQEICIQN LETGNTWDIG GEWDRPFTAH PKVAPGSGEL
301: VIFGSDAKKP FLVVGVVSDD GTKLKHKVDL KLNRSTLCHD IGVTLKYNII IDIPLTIDIG RLTTGGQLIE FEKEGYARIG IMPRYGDAES VMWFDVEPFC
401: MFHLINCFEE GDEVVVQGLR SADSVIPGPR LNKQEILPER SELKKDGKAM KQGINEKLFS RLFEWRLNLK TKTVSGEYLT GTECSLEFPM INNHYTGVRH
501: SYGYAQIVDS LTRSASSSEK VLPKYGGFAK LCLEERENTE TSAEDLIKME IHRLSEDEFC SGASFVPRVG GSHEDDGWII SFVHNERTNT SQVHIIDTQK
601: FEGAPVAKIT LPQRVPYGFH GTFVHNNIHG HVNTRSEKKM DNLKFIY
101: FTHQALLPSE SNFAPVDEIG GSIEILQIEG EIPKDFPEGV YIRNGSNPLF GALHSTVSVF GESSEIWVEG EGMLHALYFT KTGSASSWSV SYDNRYVQSE
201: TLKIEQDRQK PCFLPAIEGD SAAIIVAYIL NYLRFGKVNK NITNTNVFEH AGRVYAVAES HQPQEICIQN LETGNTWDIG GEWDRPFTAH PKVAPGSGEL
301: VIFGSDAKKP FLVVGVVSDD GTKLKHKVDL KLNRSTLCHD IGVTLKYNII IDIPLTIDIG RLTTGGQLIE FEKEGYARIG IMPRYGDAES VMWFDVEPFC
401: MFHLINCFEE GDEVVVQGLR SADSVIPGPR LNKQEILPER SELKKDGKAM KQGINEKLFS RLFEWRLNLK TKTVSGEYLT GTECSLEFPM INNHYTGVRH
501: SYGYAQIVDS LTRSASSSEK VLPKYGGFAK LCLEERENTE TSAEDLIKME IHRLSEDEFC SGASFVPRVG GSHEDDGWII SFVHNERTNT SQVHIIDTQK
601: FEGAPVAKIT LPQRVPYGFH GTFVHNNIHG HVNTRSEKKM DNLKFIY
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.