CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89285	Sorghum	plastid	80.0	64.81
HORVU1Hr1G000550.2	Barley	cytosol	69.29	58.53
Os09t0321200-00	Rice	plastid	64.85	56.32
HORVU5Hr1G055740.1	Barley	plasma membrane	72.53	55.83
TraesCS5D01G186900.1	Wheat	cytosol	72.93	55.8
TraesCS5B01G180500.1	Wheat	cytosol	73.13	53.95
KXG19379	Sorghum	mitochondrion, plastid	45.45	37.82
OQU93261	Sorghum	cytosol	27.27	24.82
OQU88453	Sorghum	plastid	25.25	21.82
EER93751	Sorghum	plastid	25.45	20.62
KXG30924	Sorghum	plastid	24.85	19.31

Protein Annotations

KEGG:00511+3.2.1.18	KEGG:00600+3.2.1.18	MapMan:35.1	UniProt:A0A1W0W4L1	InterPro:Carotenoid_Oase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872
GO:GO:0055114	EnsemblPlants:OQU89281	ProteinID:OQU89281	ProteinID:OQU89281.1	PFAM:PF03055	PANTHER:PTHR10543
PANTHER:PTHR10543:SF30	EnsemblPlantsGene:SORBI_3002G168700	SUPFAM:SSF50939	InterPro:Sialidase_sf	UniParc:UPI0009DC8FC7	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:53117356..53128807

Molecular Weight (calculated)

55596.0 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.206

Length

495 amino acids

Sequence
(BLAST)

001: MLDNFPEGVS IRIGSNPLFG AQHSTTSIFG QSREIWVEGE GMLHALYFTK TTSSGSSWSL SYANRYVQSE TFKLENARQK PCFLPATEGD SAAIIAAFML
101: NYLRFGKANK DIINTNVFEH AGRVFAVAEN SLSHEICLDS LDTGDTWDIC GEWDRPAFTP HPKVAPGSGD LVIYGINAKK PFLVIGVVSA DGTKLKHRVD
201: LKLDRCIFCH EIGVTPKYNV IMDVPLTFDI NRLIKGGQLL QFEKESYARI GLMPRYGNAD SVIWFNVEPF CMFHVINCFE EGDEVVVQGL RAPDSVIPGP
301: RLALNKYGLS EPTEDDMPMK QEINEEFFFR LYQWRLNLKT NCVSGEYLTG TEFSIEFPTI NNQYTGLQHS YAYAQVVDSV TISCGKCVKV NPKYRGFAKF
401: LLDKRNNTEI SGANLIKTQY HWLSKDEFCS GATFVPRVSG SHEDDGWIIS FVHDETTNTS QVHIIDAQRF EDAPVAKIAL PQRVPYGFHG TFITK

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.