Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010975.1-P | Field mustard | nucleus | 87.08 | 86.26 |
| CDY24418 | Canola | nucleus | 87.08 | 86.26 |
| CDY69498 | Canola | nucleus | 87.08 | 86.26 |
| Bra012496.1-P | Field mustard | nucleus | 85.17 | 83.57 |
| CDY72110 | Canola | nucleus | 85.17 | 83.57 |
| CDY03873 | Canola | nucleus | 82.78 | 81.22 |
| AT1G66140.1 | Thale cress | nucleus | 42.58 | 34.23 |
| AT5G57520.1 | Thale cress | nucleus, plastid | 22.01 | 30.67 |
| AT1G80730.1 | Thale cress | nucleus | 28.71 | 26.32 |
| AT5G25160.1 | Thale cress | nucleus | 27.27 | 24.26 |
| AT5G10970.1 | Thale cress | nucleus | 27.27 | 20.96 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:839077 | UniProt:A0A178WGG2 | ProteinID:AAF97972.1 | ProteinID:AAG03118.1 |
| ProteinID:AEE30555.1 | EMBL:AK119018 | ArrayExpress:AT1G24625 | EnsemblPlantsGene:AT1G24625 | RefSeq:AT1G24625 | TAIR:AT1G24625 |
| RefSeq:AT1G24625-TAIR-G | EnsemblPlants:AT1G24625.1 | TAIR:AT1G24625.1 | Unigene:At.1644 | EMBL:BT005629 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009738 |
| GO:GO:0009788 | GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 | GO:GO:0044212 |
| GO:GO:0046872 | GO:GO:0046982 | InterPro:IPR013087 | EMBL:L39650 | RefSeq:NP_564223.1 | ProteinID:OAP17469.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 | UniProt:Q39266 | UniProt:Q541V6 |
| SUPFAM:SSF57667 | UniParc:UPI000000420B | Symbol:ZFP7 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
Coordinates
chr1:-:8725789..8727212
Molecular Weight (calculated)
23167.7 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.744
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.