Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010975.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY24418 | Canola | nucleus | 97.63 | 97.63 |
| CDY72110 | Canola | nucleus | 88.63 | 87.79 |
| AT1G24625.1 | Thale cress | nucleus | 86.26 | 87.08 |
| CDY03873 | Canola | nucleus | 86.73 | 85.92 |
| CDY07483 | Canola | nucleus | 40.76 | 34.96 |
| CDY65468 | Canola | nucleus | 40.76 | 32.82 |
| CDY50321 | Canola | nucleus | 40.76 | 32.21 |
| CDY60000 | Canola | nucleus, plastid | 22.75 | 32.0 |
| CDY39248 | Canola | cytosol | 24.17 | 31.48 |
| CDY58140 | Canola | nucleus, plastid | 22.27 | 31.33 |
| CDY11864 | Canola | nucleus, plastid | 21.33 | 30.0 |
| CDX79357 | Canola | nucleus | 28.44 | 26.55 |
| CDX67963 | Canola | nucleus | 27.96 | 26.11 |
| CDY39947 | Canola | nucleus | 27.01 | 25.91 |
| CDY66132 | Canola | nucleus | 27.49 | 25.44 |
| CDY71759 | Canola | nucleus | 26.54 | 24.67 |
| CDX87338 | Canola | nucleus | 26.07 | 24.55 |
| CDX69795 | Canola | nucleus | 26.07 | 22.73 |
| CDX97070 | Canola | nucleus | 25.59 | 22.31 |
| CDY05474 | Canola | nucleus | 25.59 | 21.77 |
| CDY05377 | Canola | nucleus | 25.59 | 21.77 |
| CDX88160 | Canola | nucleus | 25.12 | 21.54 |
| CDY19813 | Canola | nucleus | 23.7 | 19.68 |
| CDX87097 | Canola | plastid | 9.48 | 14.39 |
Protein Annotations
| EnsemblPlants:CDY69498 | EnsemblPlantsGene:GSBRNA2T00088179001 | Gene3D:3.30.160.60 | GO:A0A078JPJ2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 |
| PFscan:PS50157 | ProteinID:CDY69498 | ProteinID:CDY69498.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0002545C5A | UniProt:A0A078JPJ2 | MapMan:15.5.15 | : | : | : |
Description
BnaA08g31130DBnaA08g31130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPJ2]
Coordinates
chrLK039567:+:1903..3223
Molecular Weight (calculated)
23627.6 Da
IEP (calculated)
7.159
GRAVY (calculated)
-0.724
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MTESDDASRE LPAREGDTSL NQDLSKPESI IPVSLDLKLN DSFNDDQKGT KCQPNPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AVHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP PPHLARFHHQ GYFGNTVPLL FDYDDGSDLF WPGSFRQVVE EAEAPVVVAV RESGLDLNSV AADGSVVDNN
201: NRSKPDLTLR L
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP PPHLARFHHQ GYFGNTVPLL FDYDDGSDLF WPGSFRQVVE EAEAPVVVAV RESGLDLNSV AADGSVVDNN
201: NRSKPDLTLR L
001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
Arabidopsis Description
ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.