CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX85250
CDX86386
CDX91181
CDY00652
CDY04058
CDY07744
CDY14473
CDY27967
CDY44405
CDY64943
CDY66704
CDY67456
CDY67814
CDY68306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	CDY66704	AT2G31985.1	21798944
AT3G63210.1	CDY68306	AT2G31985.1	21798944
AT3G63210.1	CDY07744	AT2G38270.1	21798944
AT3G63210.1	CDY14473	AT2G38270.1	21798944
AT3G63210.1	CDY00652	AT3G08850.1	21798944
AT3G63210.1	CDY27967	AT3G08850.1	21798944
AT3G63210.1	CDY64943	AT3G08850.1	21798944
AT3G63210.1	CDY67456	AT3G08850.1	21798944
AT3G63210.1	CDX85250	AT3G29160.1	21798944
AT3G63210.1	CDX86386	AT3G29160.1	21798944
AT3G63210.1	CDY04058	AT3G29160.1	21798944
AT3G63210.1	CDY44405	AT3G29160.1	21798944
AT3G63210.1	CDX70438	AT5G11980.1	21798944
AT3G63210.1	CDX78461	AT5G11980.1	21798944
AT3G63210.1	CDX91181	AT5G11980.1	21798944
AT3G63210.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040437.1-P	Field mustard	mitochondrion, plastid	98.91	90.73
CDX93919	Canola	nucleus	59.02	90.38
CDX76690	Canola	plastid	40.44	63.25
CDY56452	Canola	plastid	40.16	62.29
AT3G63210.1	Thale cress	mitochondrion, plastid	35.79	49.81
GSMUA_Achr3P25470_001	Banana	mitochondrion	20.22	31.36
CDY24316	Canola	mitochondrion, plastid	18.31	30.73
CDX98213	Canola	mitochondrion	21.58	30.15
GSMUA_Achr1P14130_001	Banana	mitochondrion	23.5	30.07
CDX92948	Canola	mitochondrion	21.58	29.92
CDY34246	Canola	mitochondrion	21.31	29.77
Os03t0665200-01	Rice	nucleus	23.77	28.81
CDY65610	Canola	mitochondrion, nucleus	21.04	28.73
EER91113	Sorghum	mitochondrion	23.5	27.39
GSMUA_Achr2P08850_001	Banana	plastid	21.86	26.85
Zm00001d013595_P001	Maize	mitochondrion	23.5	26.71
TraesCS4D01G016600.1	Wheat	mitochondrion	19.95	26.07
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	19.4	25.18
GSMUA_Achr9P25720_001	Banana	nucleus	22.4	25.0
TraesCS4A01G295300.1	Wheat	plastid	20.22	24.75
CDX69754	Canola	nucleus, plastid	18.31	24.36
GSMUA_Achr6P22030_001	Banana	cytosol	19.67	23.84
Os10t0422600-01	Rice	endoplasmic reticulum	22.4	23.77
Zm00001d032937_P001	Maize	cytosol	17.76	23.05
TraesCS4B01G018400.1	Wheat	plastid	19.13	23.03
CDX85711	Canola	plastid	13.93	22.57
CDX83224	Canola	cytosol	19.95	22.39
CDX97112	Canola	nucleus, plastid	16.67	22.26
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	16.67	21.71
CDY38508	Canola	cytosol	18.31	21.54
CDX76742	Canola	nucleus	17.21	21.0
GSMUA_Achr4P22610_001	Banana	nucleus	21.31	20.74
CDY11512	Canola	nucleus	16.94	20.67
GSMUA_Achr4P21250_001	Banana	nucleus	19.13	19.07
CDX67936	Canola	nucleus, plastid	12.57	18.04
CDX79402	Canola	nucleus, plastid	12.3	16.19
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	16.39	13.73
HORVU3Hr1G018540.1	Barley	extracellular	2.19	6.15

Protein Annotations

EnsemblPlants:CDY53722	EnsemblPlantsGene:GSBRNA2T00011283001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF15
PFAM:PF04570	PFscan:PS51795	ProteinID:CDY53722	ProteinID:CDY53722.1	SEG:seg	SignalP:SignalP-noTM
UniParc:UPI0004EDFDD9	UniProt:A0A078IUN7	MapMan:27.3.3	:	:	:

Description

BnaAnng12630DBnaAnng12630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUN7]

Coordinates

chrLK033230:+:57127..59418

Molecular Weight (calculated)

40531.6 Da

IEP (calculated)

7.317

GRAVY (calculated)

-0.178

Length

366 amino acids

Sequence
(BLAST)

001: MSYLLLVSSG FLVSFSPADG GFQSSVAAGP CLRGGEAFSV PPSLALVPGM CCSVMFSSEE SEALRWKGYD ACDGFLWVMR LTVTTDEISP RRLILSVFRT
101: QKMMAVMTRG AIDAWFAPVF RSNKASLMAA DQLPSPPTPN TYYSSDFFTS PKFRFLASKI TPFDSIISPT SILEANPSIF SSINPKPTSY LDPTIPKPQR
201: FHPPEPFGLA DLVKSRDHSS KPVNKMVLFG SKLRVQIPCA DFGTKTGPTS QMRHPHGQLK PCLQTKVLTV SEIDQTEDYT CVISHGPNPT ITHIFDNSVF
301: VEEATPPCSV PLPQETKKMD TGFLSNCYTC NKKLDQKQDI YIYRGEKGFC SSECRYQEML VDQIET

Best Arabidopsis Sequence Match ( AT3G63210.1 )
(BLAST)

001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET

Arabidopsis Description

MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.