CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67936	Canola	nucleus, plastid	65.47	71.37
AT1G79970.1	Thale cress	nucleus, plastid	36.69	42.5
KRG91310	Soybean	nucleus, plastid	24.1	24.91
KRH35505	Soybean	nucleus, plastid	23.74	24.81
KRH27651	Soybean	plastid	21.94	23.55
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	22.66	22.34
VIT_05s0020g03670.t01	Wine grape	nucleus, plastid	23.38	22.26
CDY65610	Canola	mitochondrion, nucleus	20.86	21.64
CDX98213	Canola	mitochondrion	20.14	21.37
GSMUA_Achr1P14130_001	Banana	mitochondrion	21.58	20.98
CDX92948	Canola	mitochondrion	19.78	20.83
KRH77839	Soybean	plastid	19.42	20.69
CDY34246	Canola	mitochondrion	19.42	20.61
GSMUA_Achr3P25470_001	Banana	mitochondrion	17.27	20.34
CDY11512	Canola	nucleus	21.58	20.0
CDY38508	Canola	cytosol	22.3	19.94
CDY24316	Canola	mitochondrion, plastid	15.47	19.72
CDX76742	Canola	nucleus	21.22	19.67
CDX83224	Canola	cytosol	22.66	19.33
CDX69754	Canola	nucleus, plastid	18.7	18.91
CDX93919	Canola	nucleus	16.19	18.83
GSMUA_Achr2P08850_001	Banana	plastid	19.78	18.46
CDX97112	Canola	nucleus, plastid	17.99	18.25
CDY56452	Canola	plastid	15.47	18.22
TraesCS4D01G016600.1	Wheat	mitochondrion	18.35	18.21
GSMUA_Achr6P22030_001	Banana	cytosol	19.78	18.21
Os03t0665200-01	Rice	nucleus	19.78	18.21
GSMUA_Achr9P25720_001	Banana	nucleus	21.22	17.99
CDX76690	Canola	plastid	15.11	17.95
Zm00001d032937_P001	Maize	cytosol	17.99	17.73
Zm00001d013595_P001	Maize	mitochondrion	20.14	17.39
TraesCS4B01G018400.1	Wheat	plastid	18.7	17.11
EER91113	Sorghum	mitochondrion	19.06	16.88
TraesCS4A01G295300.1	Wheat	plastid	17.63	16.39
GSMUA_Achr4P21250_001	Banana	nucleus	21.22	16.08
CDX85711	Canola	plastid	12.95	15.93
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	15.47	15.3
Solyc06g009000.1.1	Tomato	plastid	15.47	14.93
PGSC0003DMT400037957	Potato	plastid	15.47	14.68
Os10t0422600-01	Rice	endoplasmic reticulum	16.91	13.62
GSMUA_Achr4P22610_001	Banana	nucleus	17.99	13.3
CDY53722	Canola	extracellular, vacuole	16.19	12.3
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	15.83	10.07
HORVU3Hr1G018540.1	Barley	extracellular	3.96	8.46

Protein Annotations

EnsemblPlants:CDX79402	EnsemblPlantsGene:GSBRNA2T00132115001	PANTHER:PTHR33059	PANTHER:PTHR33059:SF15	ProteinID:CDX79402	ProteinID:CDX79402.1
SEG:seg	UniParc:UPI0004EB60BE	MapMan:35.2	:	:	:

Description

BnaC06g19010D

Coordinates

chrLK031817:-:1951465..1953003

Molecular Weight (calculated)

30182.7 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.584

Length

278 amino acids

Sequence
(BLAST)

001: MAEADPDSSD TSDLKPNSSA PLFSIPRFFV AKESDAAGRS PTSPLDFTIF GGLFSPRSPP AAPSSPRFRN RWACDKVGLS LLSSSVGEEE GHEEGLFNVV
101: LAPQIKPRLF GSCVKSYSLP KNYAAPSMSS DAVNIEEEHN IHDSEEHNSP RRSSSSPMDI ISSQAYSRSL SAREMALSED YTCIISHGPN PKTTHIFGDC
201: ILDCDPKDLG TKDETEKPEG GDDSFLCLCT DKPQNHIHMH SETSATAEEK ESDKGVVEDC LEISPGTSYN EDLFPMAS

Best Arabidopsis Sequence Match ( AT1G79970.1 )
(BLAST)

001: MGEASDSDSS DESLKHNSTP PLFSISGFFC VAKGGDSDPG RSPTSPLDFG VFGGLFSPRS SSSSPLHRNK WLSHKVGLSL LSSSFELGDD PFRRDYIVLA
101: PQVKVNNVNT ATPKLSSDPC VIVEEPRRSS SSSPMDIIST YSRSLSGREM ALSEDYTCII SHGPNPKTTY IFGDCILDCD PKDLGKEDIE IHEEGDDSFS
201: TEKPQNHREV SAEKESENAG AEESCYEEED LFPMAMPLNP

Arabidopsis Description

At1g79970/F19K16.7 [Source:UniProtKB/TrEMBL;Acc:Q9CA98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.