Factsheet for Solyc06g009000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037957	Potato	plastid	60.76	59.73
Solyc09g065390.1.1	Tomato	mitochondrion	17.01	26.63
Solyc09g082210.2.1	Tomato	cytosol, plastid	22.57	22.11
GSMUA_Achr3P25470_001	Banana	mitochondrion	18.06	22.03
GSMUA_Achr1P14130_001	Banana	mitochondrion	21.88	22.03
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	19.44	19.86
GSMUA_Achr2P08850_001	Banana	plastid	20.14	19.46
GSMUA_Achr9P25720_001	Banana	nucleus	21.18	18.6
CDX67936	Canola	nucleus, plastid	14.93	16.86
Os03t0665200-01	Rice	nucleus	17.36	16.56
GSMUA_Achr4P21250_001	Banana	nucleus	20.14	15.8
EER91113	Sorghum	mitochondrion	17.01	15.61
Bra003541.1-P	Field mustard	nucleus, plastid	14.93	15.47
CDX79402	Canola	nucleus, plastid	14.93	15.47
GSMUA_Achr4P22610_001	Banana	nucleus	20.14	15.43
Zm00001d013595_P001	Maize	mitochondrion	17.01	15.22
TraesCS4D01G016600.1	Wheat	mitochondrion	14.58	15.0
TraesCS4B01G018400.1	Wheat	plastid	15.28	14.47
Zm00001d032937_P001	Maize	cytosol	13.89	14.18
TraesCS4A01G295300.1	Wheat	plastid	14.58	14.05
GSMUA_Achr6P22030_001	Banana	cytosol	14.58	13.91
AT1G79970.1	Thale cress	nucleus, plastid	11.46	13.75
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	12.85	13.17
Os10t0422600-01	Rice	endoplasmic reticulum	15.62	13.04
Solyc08g067970.2.1	Tomato	nucleus	18.06	12.81
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	15.28	10.07
HORVU3Hr1G018540.1	Barley	extracellular	1.74	3.85

Protein Annotations

EnsemblPlants:Solyc06g009000.1.1	EnsemblPlantsGene:Solyc06g009000.1	PANTHER:PTHR33059	PANTHER:PTHR33059:SF15	SEG:seg	UniParc:UPI0002766B04
UniProt:K4C3T0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6:-:2946906..2947772

Molecular Weight (calculated)

32502.3 Da

IEP (calculated)

7.417

GRAVY (calculated)

-0.743

Length

288 amino acids

Sequence
(BLAST)

001: MDNQSSNCPS QNFTQNHTNK PISSFLGSPR IFNGLLTRSL SDIGTIRTSR DRLYDTEIIS SPNSLLDDMQ NLNIGNPFGY DRKSPNPITK NPPTINTTPK
101: IMPRFQTSQD QLYDVECIVN SNSTLDGMQN HNLGSPFGYD RKPPNPFTKR PPNNELKSEI ITSQFQTSLS YDRKSQNPIT KKHPNSKMES ESIGLALIDP
201: KVTSEKFHVL FGAKLKIEIP CSIIEVKNNT CEDLDEMESS EDYTCVITHG PNPKTTHIFD NCIIERCCGV RKFRENSCKV DHIKGKDI

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.