Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004148.1-P | Field mustard | nucleus | 99.59 | 96.46 |
| CDY39248 | Canola | cytosol | 59.35 | 90.12 |
| AT1G66140.1 | Thale cress | nucleus | 81.3 | 76.92 |
| CDY65468 | Canola | nucleus | 78.46 | 73.66 |
| CDY50321 | Canola | nucleus | 79.27 | 73.03 |
| PGSC0003DMT400075890 | Potato | nucleus | 26.83 | 46.15 |
| PGSC0003DMT400075898 | Potato | nucleus | 42.28 | 44.26 |
| PGSC0003DMT400075895 | Potato | nucleus | 41.87 | 43.83 |
| GSMUA_Achr6P11350_001 | Banana | nucleus | 38.21 | 42.34 |
| KRG89273 | Soybean | nucleus | 40.65 | 42.02 |
| PGSC0003DMT400058615 | Potato | nucleus | 42.68 | 42.0 |
| Solyc01g005130.2.1 | Tomato | nucleus | 42.28 | 41.6 |
| KRH04587 | Soybean | cytosol | 33.33 | 41.41 |
| CDY69498 | Canola | nucleus | 34.96 | 40.76 |
| CDY24418 | Canola | nucleus | 34.15 | 39.81 |
| CDY72110 | Canola | nucleus | 34.15 | 39.44 |
| CDY03873 | Canola | nucleus | 33.74 | 38.97 |
| KRH58613 | Soybean | nucleus | 39.43 | 38.96 |
| KRH42519 | Soybean | nucleus | 39.02 | 38.25 |
| KRH49708 | Soybean | nucleus | 37.8 | 36.61 |
| CDY11864 | Canola | nucleus, plastid | 21.54 | 35.33 |
| CDY58140 | Canola | nucleus, plastid | 21.54 | 35.33 |
| CDY60000 | Canola | nucleus, plastid | 21.54 | 35.33 |
| Zm00001d047968_P001 | Maize | nucleus | 29.67 | 34.43 |
| Os03t0239300-01 | Rice | nucleus | 31.71 | 32.5 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 30.08 | 32.31 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 28.46 | 32.11 |
| HORVU4Hr1G064150.1 | Barley | plastid | 30.89 | 32.07 |
| Zm00001d028371_P001 | Maize | nucleus | 28.46 | 31.96 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 30.49 | 30.86 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 30.08 | 30.58 |
| CDY39947 | Canola | nucleus | 26.83 | 30.0 |
| CDY66132 | Canola | nucleus | 27.64 | 29.82 |
| CDY71759 | Canola | nucleus | 27.24 | 29.52 |
| CDX79357 | Canola | nucleus | 26.83 | 29.2 |
| CDX87338 | Canola | nucleus | 26.42 | 29.02 |
| CDX67963 | Canola | nucleus | 26.42 | 28.76 |
| CDX69795 | Canola | nucleus | 26.02 | 26.45 |
| CDX97070 | Canola | nucleus | 25.61 | 26.03 |
| CDY05377 | Canola | nucleus | 25.61 | 25.4 |
| CDY05474 | Canola | nucleus | 25.61 | 25.4 |
| CDX88160 | Canola | nucleus | 24.8 | 24.8 |
| CDY19813 | Canola | nucleus | 23.17 | 22.44 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 6.5 | 21.05 |
| CDX87097 | Canola | plastid | 8.54 | 15.11 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078F781 | UniProt:A0A078F781 | EnsemblPlants:CDY07483 | ProteinID:CDY07483 |
| ProteinID:CDY07483.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009788 | GO:GO:0009987 |
| GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 | GO:GO:0044212 | EnsemblPlantsGene:GSBRNA2T00124484001 | InterPro:IPR013087 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 | SUPFAM:SSF57667 | UniParc:UPI0004EE5A29 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
BnaA07g25620DBnaA07g25620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F781]
Coordinates
chrLK031978:-:909723..912387
Molecular Weight (calculated)
27194.7 Da
IEP (calculated)
6.152
GRAVY (calculated)
-0.600
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSILDLEAE ASSEHNHPED TSSQAASNLS PVGEYCRPIS LNLSLRFNNN NNNLDLESSS LTLPISSTSE SSNPEQQQQQ QQQPSALKRV FSCNYCQRKF
101: YSSQALGGHQ NAHKRERTLA KRAMRMGSST PYATAALSCL PLHGNMTSLR TLGIQAHGSS HDPRPAPETI IRNIARFNQG YFSNCVPFYV EDDDTELLWP
201: GSFRQAAGAV RAEACNDNLG ESKVDFLEVK QAVDMESCLP DLTLKL
101: YSSQALGGHQ NAHKRERTLA KRAMRMGSST PYATAALSCL PLHGNMTSLR TLGIQAHGSS HDPRPAPETI IRNIARFNQG YFSNCVPFYV EDDDTELLWP
201: GSFRQAAGAV RAEACNDNLG ESKVDFLEVK QAVDMESCLP DLTLKL
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Arabidopsis Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.