Factsheet for Solyc01g005130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058615	Potato	nucleus	96.4	96.4
KRH58613	Soybean	nucleus	56.4	56.63
KRH42519	Soybean	nucleus	56.0	55.78
KRG89273	Soybean	nucleus	49.2	51.68
KRH04587	Soybean	cytosol	38.8	48.99
Solyc11g011890.1.1	Tomato	nucleus	47.2	47.97
Solyc04g014540.1.1	Tomato	nucleus	43.6	46.98
KRH49708	Soybean	nucleus	47.6	46.85
CDY07483	Canola	nucleus	41.6	42.28
AT1G66140.1	Thale cress	nucleus	43.6	41.92
Bra004148.1-P	Field mustard	nucleus	42.0	41.34
GSMUA_Achr6P11350_001	Banana	nucleus	36.4	40.99
Bra039750.1-P	Field mustard	nucleus	41.6	39.69
CDY65468	Canola	nucleus	41.6	39.69
CDY39248	Canola	cytosol	25.6	39.51
CDY50321	Canola	nucleus	41.6	38.95
Solyc01g107430.2.1	Tomato	nucleus	25.6	36.99
Solyc10g049870.1.1	Tomato	nucleus	24.8	36.05
Zm00001d047968_P001	Maize	nucleus	29.2	34.43
Solyc07g006880.1.1	Tomato	nucleus, plastid	22.0	33.74
Os03t0239300-01	Rice	nucleus	31.6	32.92
Zm00001d028371_P001	Maize	nucleus	28.4	32.42
TraesCS4D01G230300.1	Wheat	nucleus	28.0	32.11
HORVU4Hr1G064150.1	Barley	plastid	30.4	32.07
EER92577	Sorghum	cytosol, mitochondrion, nucleus	29.2	31.88
TraesCS4A01G073200.1	Wheat	nucleus	30.4	31.41
TraesCS4B01G229200.1	Wheat	nucleus	30.0	30.86
Solyc06g068390.1.1	Tomato	nucleus	21.6	30.51
Solyc03g117070.1.1	Tomato	nucleus	25.2	27.51
HORVU0Hr1G008920.1	Barley	mitochondrion	6.0	19.74

Protein Annotations

EnsemblPlants:Solyc01g005130.2.1	EnsemblPlantsGene:Solyc01g005130.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF313	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF57667	UniParc:UPI00027618D9	UniProt:K4AS80	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr1:+:124758..125782

Molecular Weight (calculated)

27502.1 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.651

Length

250 amino acids

Sequence
(BLAST)

001: MKPPNFNLES EDESEVSSSQ VASNTSAQEI SPDPYKDNTT NSSCLTNSLN LQQESKAVTL DLTLGFNSGA DTESKGNPEA GSEVVPHPPA AQVSRIFSCN
101: FCRRKFYSSQ ALGGHQNAHK RERTLAKRAM RMGMLSERYA SLASLPLHGS PYRSLGIEAH ASVHQRASQQ QERHMHAIRG GARFEQSYFG VPVYMEDDDM
201: EMFWPGSFRQ VDGVGSNVVL NSGQRSNINF VPMAPPPNTQ PSLPDLNLKL

Best Arabidopsis Sequence Match ( AT1G66140.1 )
(BLAST)

001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL

Arabidopsis Description

ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.