Factsheet for Solyc04g014540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060730	Potato	nucleus	97.41	95.76
Solyc11g011890.1.1	Tomato	nucleus	67.67	63.82
KRH72952	Soybean	nucleus	56.9	51.36
KRH17304	Soybean	nucleus	56.03	50.58
KRG97966	Soybean	nucleus	51.29	47.41
KRH30916	Soybean	nucleus	47.84	44.58
Solyc01g005130.2.1	Tomato	nucleus	46.98	43.6
VIT_01s0011g06200.t01	Wine grape	nucleus	45.69	43.09
GSMUA_Achr6P11350_001	Banana	nucleus	40.95	42.79
Solyc01g107430.2.1	Tomato	nucleus	28.45	38.15
Solyc10g049870.1.1	Tomato	nucleus	27.16	36.63
Solyc07g006880.1.1	Tomato	nucleus, plastid	23.28	33.13
Zm00001d047968_P001	Maize	nucleus	29.74	32.55
Os03t0239300-01	Rice	nucleus	33.62	32.5
Zm00001d028371_P001	Maize	nucleus	30.17	31.96
HORVU4Hr1G064150.1	Barley	plastid	32.33	31.65
Solyc06g068390.1.1	Tomato	nucleus	24.14	31.64
TraesCS4D01G230300.1	Wheat	nucleus	29.31	31.19
TraesCS4B01G229200.1	Wheat	nucleus	32.33	30.86
TraesCS4A01G073200.1	Wheat	nucleus	31.9	30.58
EER92577	Sorghum	cytosol, mitochondrion, nucleus	30.17	30.57
Solyc03g117070.1.1	Tomato	nucleus	27.59	27.95
HORVU0Hr1G008920.1	Barley	mitochondrion	6.9	21.05

Protein Annotations

EnsemblPlants:Solyc04g014540.1.1	EnsemblPlantsGene:Solyc04g014540.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF239	PFscan:PS50157	ScanProsite:PS00028	SUPFAM:SSF57667
UniParc:UPI000276660A	UniProt:K4BPV8	MapMan:15.5.15	:	:	:

Description

No Description!

Coordinates

chr4:+:4814713..4815411

Molecular Weight (calculated)

25446.4 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.442

Length

232 amino acids

Sequence
(BLAST)

001: MEASSGNDSD ITSQVASNIE FSEPVSLDLS LGFNSGTDEF ASQDSIGFSV SSTCDESSNE LAASQTSGEA VVRRVFTCNF CKRKFYSSQA LGGHQNAHKR
101: ERTLAKRAMR MGIFSERYGN LAALPLHGST SRSLGIKAHS SMHHGFPQAM GSLDFRTSAR FEYVHHQSPS LYVEDIDEAD HLLWPGSFRQ VSNADISHRP
201: TISFTGCSNV NSVEWTPSVE KDNLTPDLTL RL

Best Arabidopsis Sequence Match ( AT1G66140.1 )
(BLAST)

001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL

Arabidopsis Description

ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.