Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001386.1-P | |
| Bra029889.1-P | |
| Bra034159.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66140.1 | Bra001386.1-P | AT3G11020.1 | 21245844 |
| AT1G66140.1 | Bra029889.1-P | AT3G11020.1 | 21245844 |
| AT1G66140.1 | Bra034159.1-P | AT3G11020.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65468 | Canola | nucleus | 99.62 | 99.62 |
| CDY50321 | Canola | nucleus | 96.56 | 94.76 |
| AT1G66140.1 | Thale cress | nucleus | 83.97 | 84.62 |
| Bra004148.1-P | Field mustard | nucleus | 76.34 | 78.74 |
| PGSC0003DMT400075890 | Potato | nucleus | 25.19 | 46.15 |
| PGSC0003DMT400075898 | Potato | nucleus | 40.84 | 45.53 |
| PGSC0003DMT400075895 | Potato | nucleus | 40.84 | 45.53 |
| KRG89273 | Soybean | nucleus | 40.08 | 44.12 |
| KRH04587 | Soybean | cytosol | 33.21 | 43.94 |
| GSMUA_Achr6P11350_001 | Banana | nucleus | 36.26 | 42.79 |
| PGSC0003DMT400058615 | Potato | nucleus | 40.08 | 42.0 |
| Solyc01g005130.2.1 | Tomato | nucleus | 39.69 | 41.6 |
| KRH58613 | Soybean | nucleus | 38.55 | 40.56 |
| Bra010975.1-P | Field mustard | nucleus | 32.44 | 40.28 |
| KRH42519 | Soybean | nucleus | 38.55 | 40.24 |
| Bra012496.1-P | Field mustard | nucleus | 32.44 | 39.91 |
| KRH49708 | Soybean | nucleus | 38.17 | 39.37 |
| Zm00001d047968_P001 | Maize | nucleus | 28.63 | 35.38 |
| Bra020437.1-P | Field mustard | nucleus, plastid | 20.23 | 35.33 |
| Bra006815.1-P | Field mustard | nucleus, plastid | 19.85 | 34.67 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 27.86 | 33.49 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 29.01 | 33.19 |
| HORVU4Hr1G064150.1 | Barley | plastid | 29.77 | 32.91 |
| Zm00001d028371_P001 | Maize | nucleus | 27.48 | 32.88 |
| Os03t0239300-01 | Rice | nucleus | 29.77 | 32.5 |
| Bra035157.1-P | Field mustard | nucleus | 26.34 | 32.24 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 29.39 | 31.82 |
| Bra008445.1-P | Field mustard | nucleus | 26.34 | 31.8 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 29.39 | 31.69 |
| Bra003582.1-P | Field mustard | nucleus | 25.57 | 31.02 |
| Bra009000.1-P | Field mustard | nucleus | 24.05 | 26.03 |
| Bra020486.1-P | Field mustard | nucleus | 24.43 | 25.81 |
| Bra009822.1-P | Field mustard | nucleus | 23.66 | 24.41 |
| Bra036535.1-P | Field mustard | nucleus | 22.9 | 23.62 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 6.11 | 21.05 |
Protein Annotations
| EnsemblPlants:Bra039750.1 | EnsemblPlants:Bra039750.1-P | EnsemblPlantsGene:Bra039750 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002545B1A | UniProt:M4FF78 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
AT1G66140 (E=3e-089) ZFP4 | ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding
Coordinates
chrA02:-:9729975..9730763
Molecular Weight (calculated)
28561.5 Da
IEP (calculated)
6.868
GRAVY (calculated)
-0.463
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRPILDLEI EASSKHDHSD STSSQVASNL SPVGDDYKPI SLDLSLCFNN NNNNLDLESS SLTLPISSTS EISNPEQQQP SVSKRVFSCN YCQRKFYSSQ
101: ALGGHQNAHK RERTLAKRAM RMGLAGVFPG RGSSSSYAAA ATAAALSCLP LHGSGNNGNM TSFRTLGIRA HASPHDLGIT RPTQETIIRN IARFNQGYFS
201: NFVPFLVEDD EAELLWPGSF RQQASDAAEG GNGDLGQRKM DYLEVKQAVD MKCSLPDLTL KL
101: ALGGHQNAHK RERTLAKRAM RMGLAGVFPG RGSSSSYAAA ATAAALSCLP LHGSGNNGNM TSFRTLGIRA HASPHDLGIT RPTQETIIRN IARFNQGYFS
201: NFVPFLVEDD EAELLWPGSF RQQASDAAEG GNGDLGQRKM DYLEVKQAVD MKCSLPDLTL KL
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Arabidopsis Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.