Factsheet for AT5G10970.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009000.1-P	Field mustard	nucleus	69.12	77.69
CDX69795	Canola	nucleus	69.12	77.69
CDX97070	Canola	nucleus	69.12	77.69
AT5G25160.1	Thale cress	nucleus	52.57	60.85
VIT_09s0002g09080.t01	Wine grape	nucleus	41.54	42.32
KRH44531	Soybean	nucleus	32.72	39.56
Solyc06g068390.1.1	Tomato	nucleus	25.74	39.55
KRH23633	Soybean	nucleus	31.99	38.16
PGSC0003DMT400073330	Potato	nucleus	27.94	37.81
AT5G57520.1	Thale cress	nucleus, plastid	20.59	37.33
AT1G80730.1	Thale cress	nucleus	30.51	36.4
KRH61695	Soybean	nucleus	36.4	35.23
KRH09666	Soybean	nucleus	34.19	34.96
KRH47378	Soybean	nucleus	33.46	34.87
KRH52363	Soybean	nucleus	35.29	32.76
KRH15782	Soybean	nucleus	37.13	32.37
GSMUA_Achr2P05140_001	Banana	nucleus	29.04	31.23
GSMUA_Achr5P22810_001	Banana	nucleus	29.41	31.13
KRH05270	Soybean	nucleus	36.4	30.18
GSMUA_Achr6P01990_001	Banana	nucleus	26.84	29.44
GSMUA_Achr8P29430_001	Banana	nucleus	27.21	28.79
TraesCS6D01G135200.1	Wheat	nucleus	18.01	28.32
AT1G24625.1	Thale cress	nucleus	20.96	27.27
TraesCS6A01G145900.1	Wheat	nucleus	18.38	27.03
HORVU0Hr1G015760.1	Barley	nucleus	17.28	26.86
AT1G66140.1	Thale cress	nucleus	24.26	25.38
OQU84499	Sorghum	nucleus	18.01	25.13
Os02t0182300-00	Rice	cytosol, mitochondrion, peroxisome	17.65	24.74
TraesCS5D01G354900.1	Wheat	nucleus	18.75	22.97
Zm00001d015525_P001	Maize	nucleus	13.97	21.71
TraesCS3B01G560300.1	Wheat	nucleus	19.85	21.26
TraesCS5D01G355400.1	Wheat	nucleus	18.75	21.07
EES00097	Sorghum	nucleus	22.43	20.61
TraesCS3A01G497500.1	Wheat	nucleus	19.49	20.38
TraesCS3D01G505300.1	Wheat	nucleus	19.12	20.16
Zm00001d050143_P001	Maize	nucleus	20.22	19.43

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:830964	UniProt:A0A178UDF9	EMBL:AB493745	ProteinID:AED91616.1
ArrayExpress:AT5G10970	EnsemblPlantsGene:AT5G10970	RefSeq:AT5G10970	TAIR:AT5G10970	RefSeq:AT5G10970-TAIR-G	EnsemblPlants:AT5G10970.1
TAIR:AT5G10970.1	Unigene:At.54808	ProteinID:CAB96852.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR013087	RefSeq:NP_196658.1	ProteinID:OAO91284.1	PO:PO:0000293	PO:PO:0007115
PO:PO:0009005	PO:PO:0009025	PO:PO:0020100	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF258	UniProt:Q9LEU3	SUPFAM:SSF57667	UniParc:UPI00000A0176	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEU3]

Coordinates

chr5:+:3469268..3470086

Molecular Weight (calculated)

30190.2 Da

IEP (calculated)

6.172

GRAVY (calculated)

-0.647

Length

272 amino acids

Sequence
(BLAST)

001: MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.