Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P05140_001 | Banana | nucleus | 49.42 | 50.2 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 38.52 | 39.92 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 36.97 | 36.97 |
| AT1G80730.1 | Thale cress | nucleus | 31.52 | 35.53 |
| Bra003582.1-P | Field mustard | nucleus | 29.57 | 35.19 |
| Bra008445.1-P | Field mustard | nucleus | 29.57 | 35.02 |
| KRH23633 | Soybean | nucleus | 30.74 | 34.65 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 35.41 | 34.08 |
| Solyc03g117070.1.1 | Tomato | nucleus | 30.35 | 34.06 |
| CDY66132 | Canola | nucleus | 29.57 | 33.33 |
| KRH44531 | Soybean | nucleus | 29.18 | 33.33 |
| PGSC0003DMT400036628 | Potato | nucleus | 28.79 | 33.33 |
| CDX67963 | Canola | nucleus | 29.18 | 33.19 |
| CDX79357 | Canola | nucleus | 29.18 | 33.19 |
| CDY39947 | Canola | nucleus | 28.4 | 33.18 |
| Bra035157.1-P | Field mustard | nucleus | 27.63 | 33.18 |
| AT5G25160.1 | Thale cress | nucleus | 29.96 | 32.77 |
| CDY71759 | Canola | nucleus | 28.79 | 32.6 |
| CDX88160 | Canola | nucleus | 30.74 | 32.11 |
| CDX87338 | Canola | nucleus | 27.63 | 31.7 |
| CDY05377 | Canola | nucleus | 30.35 | 31.45 |
| Bra009822.1-P | Field mustard | nucleus | 30.74 | 31.1 |
| CDY05474 | Canola | nucleus | 29.96 | 31.05 |
| Bra020486.1-P | Field mustard | nucleus | 29.96 | 31.05 |
| CDX97070 | Canola | nucleus | 29.18 | 30.99 |
| CDX69795 | Canola | nucleus | 29.18 | 30.99 |
| Bra009000.1-P | Field mustard | nucleus | 29.18 | 30.99 |
| KRH09666 | Soybean | nucleus | 31.91 | 30.83 |
| KRH47378 | Soybean | nucleus | 30.35 | 29.89 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 19.84 | 29.48 |
| GSMUA_Achr4P03360_001 | Banana | nucleus | 20.62 | 29.44 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 19.46 | 28.57 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 20.23 | 28.11 |
| GSMUA_Achr4P10880_001 | Banana | nucleus | 20.23 | 27.81 |
| AT5G10970.1 | Thale cress | nucleus | 28.79 | 27.21 |
| OQU84499 | Sorghum | nucleus | 20.62 | 27.18 |
| Bra036535.1-P | Field mustard | nucleus | 26.85 | 27.17 |
| CDY19813 | Canola | nucleus | 26.85 | 27.17 |
| GSMUA_Achr6P11350_001 | Banana | nucleus | 22.18 | 25.68 |
| GSMUA_Achr10P... | Banana | nucleus | 17.9 | 25.27 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 18.68 | 24.74 |
| GSMUA_Achr6P24010_001 | Banana | nucleus | 16.73 | 24.71 |
| Zm00001d015525_P001 | Maize | nucleus | 16.73 | 24.57 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 21.01 | 24.32 |
| GSMUA_Achr10P... | Banana | nucleus | 18.29 | 22.71 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 21.01 | 22.31 |
| CDX87097 | Canola | plastid | 12.06 | 22.3 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 22.18 | 22.09 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 21.79 | 22.05 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 22.18 | 21.92 |
| EES00097 | Sorghum | nucleus | 23.35 | 20.27 |
| Zm00001d050143_P001 | Maize | nucleus | 21.4 | 19.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P29430_001 | EnsemblPlants:GSMUA_Achr8T29430_001 | EnsemblPlantsGene:GSMUA_Achr8G29430_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF258 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI00029608AA |
| UniProt:M0TUP6 | MapMan:15.5.15 | : | : | : | : |
Description
Putative Zinc finger protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G29430_001]
Coordinates
chr8:+:31815453..31816226
Molecular Weight (calculated)
27635.1 Da
IEP (calculated)
8.987
GRAVY (calculated)
-0.403
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLILPLHAG HIPCESSSMM EGEGKKSEEK KDDGGAALRP SQHEEQKAKV VFCSSSSSSS LSPTLELNLI ESLVSVPSEP PPAEATTELE PRVFPCNYCR
101: RRFYSSQALG GHQNAHKRER TLAKRGSHGA GFGEANCGYV PSMASLPLRG TYAGRPLGIQ AHSMVHKPHK VTSPPLAAAM FYGQHGWSIS PIISRRPEVG
201: RISTEVIHAT TIPPPVQLND PAAAAAAAAA EMIQEVGGNH LNSRREKLPK LDLSLKL
101: RRFYSSQALG GHQNAHKRER TLAKRGSHGA GFGEANCGYV PSMASLPLRG TYAGRPLGIQ AHSMVHKPHK VTSPPLAAAM FYGQHGWSIS PIISRRPEVG
201: RISTEVIHAT TIPPPVQLND PAAAAAAAAA EMIQEVGGNH LNSRREKLPK LDLSLKL
001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
Arabidopsis Description
ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.