Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P01990_001 | Banana | nucleus | 63.81 | 66.13 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 45.14 | 45.85 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 39.3 | 37.83 |
| KRH23633 | Soybean | nucleus | 33.07 | 37.28 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 36.97 | 36.97 |
| PGSC0003DMT400036628 | Potato | nucleus | 31.91 | 36.94 |
| KRH44531 | Soybean | nucleus | 31.91 | 36.44 |
| Solyc03g117070.1.1 | Tomato | nucleus | 31.91 | 35.81 |
| CDY39947 | Canola | nucleus | 29.57 | 34.55 |
| AT1G80730.1 | Thale cress | nucleus | 30.35 | 34.21 |
| Bra003582.1-P | Field mustard | nucleus | 28.4 | 33.8 |
| Bra035157.1-P | Field mustard | nucleus | 28.02 | 33.64 |
| Bra008445.1-P | Field mustard | nucleus | 28.4 | 33.64 |
| CDX79357 | Canola | nucleus | 29.57 | 33.63 |
| CDY66132 | Canola | nucleus | 29.57 | 33.33 |
| CDX67963 | Canola | nucleus | 29.18 | 33.19 |
| KRH09666 | Soybean | nucleus | 34.24 | 33.08 |
| CDX97070 | Canola | nucleus | 31.13 | 33.06 |
| CDX87338 | Canola | nucleus | 28.79 | 33.04 |
| CDX69795 | Canola | nucleus | 30.74 | 32.64 |
| Bra009000.1-P | Field mustard | nucleus | 30.74 | 32.64 |
| CDY71759 | Canola | nucleus | 28.79 | 32.6 |
| KRH47378 | Soybean | nucleus | 32.3 | 31.8 |
| GSMUA_Achr6P24010_001 | Banana | nucleus | 20.23 | 29.89 |
| Bra020486.1-P | Field mustard | nucleus | 28.79 | 29.84 |
| CDY05474 | Canola | nucleus | 28.79 | 29.84 |
| AT5G25160.1 | Thale cress | nucleus | 27.24 | 29.79 |
| CDY05377 | Canola | nucleus | 28.4 | 29.44 |
| AT5G10970.1 | Thale cress | nucleus | 31.13 | 29.41 |
| GSMUA_Achr4P03360_001 | Banana | nucleus | 20.23 | 28.89 |
| GSMUA_Achr4P10880_001 | Banana | nucleus | 21.01 | 28.88 |
| GSMUA_Achr10P... | Banana | nucleus | 20.23 | 28.57 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 19.07 | 28.32 |
| GSMUA_Achr6P11350_001 | Banana | nucleus | 24.12 | 27.93 |
| CDX88160 | Canola | nucleus | 26.46 | 27.64 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 19.46 | 27.03 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 18.29 | 26.86 |
| Bra009822.1-P | Field mustard | nucleus | 26.46 | 26.77 |
| OQU84499 | Sorghum | nucleus | 20.23 | 26.67 |
| CDY19813 | Canola | nucleus | 26.07 | 26.38 |
| Bra036535.1-P | Field mustard | nucleus | 26.07 | 26.38 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 21.4 | 24.77 |
| CDX87097 | Canola | plastid | 12.84 | 23.74 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 22.18 | 23.55 |
| GSMUA_Achr10P... | Banana | nucleus | 18.68 | 23.19 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 17.12 | 22.68 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 22.57 | 22.48 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 22.18 | 22.44 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 22.18 | 21.92 |
| Zm00001d050143_P001 | Maize | nucleus | 23.35 | 21.2 |
| Zm00001d015525_P001 | Maize | nucleus | 14.4 | 21.14 |
| EES00097 | Sorghum | nucleus | 24.12 | 20.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P22810_001 | EnsemblPlants:GSMUA_Achr5T22810_001 | EnsemblPlantsGene:GSMUA_Achr5G22810_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF258 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000294CF7A | UniProt:M0T0V6 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Putative Zinc finger protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G22810_001]
Coordinates
chr5:+:24723702..24724475
Molecular Weight (calculated)
28015.2 Da
IEP (calculated)
6.852
GRAVY (calculated)
-0.566
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVLGFTTET TLSQTTSTLS ETPHVVAKQE CMMVLEEAEE KQQEEGGEQP KFNEELLDLS LSNKDAGEKS PSLSTSTPVL ELNLIESLGG AEPSTASGAL
101: PHRGSPESEP RVFSCNYCRR KFYSSQALGG HQNAHKRERS LTKNGARPGA RLGDHPSHRF PPSMAALPLH GMYGGRPLGI QVHSMIHKPC YGSSLNERQP
201: GVGRLMARED FCARTSALAA RFDEPQAVIG GHRWIDAGDQ VIVGKKEVQK LDLTLKL
101: PHRGSPESEP RVFSCNYCRR KFYSSQALGG HQNAHKRERS LTKNGARPGA RLGDHPSHRF PPSMAALPLH GMYGGRPLGI QVHSMIHKPC YGSSLNERQP
201: GVGRLMARED FCARTSALAA RFDEPQAVIG GHRWIDAGDQ VIVGKKEVQK LDLTLKL
001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
Arabidopsis Description
ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.