Factsheet for VIT_01s0011g04870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50371	Soybean	nucleus	76.89	81.22
KRG89300	Soybean	nucleus	76.0	78.08
Bra026666.1-P	Field mustard	nucleus	49.33	71.15
GSMUA_Achr4P06480_001	Banana	nucleus	51.56	69.88
Solyc05g008050.1.1	Tomato	nucleus	63.11	67.94
CDY40379	Canola	nucleus	59.11	67.86
CDY17676	Canola	nucleus	59.11	67.51
CDX77824	Canola	nucleus	60.0	67.5
Bra024888.1-P	Field mustard	nucleus	58.67	67.01
CDY63827	Canola	nucleus	58.22	66.84
GSMUA_AchrUn_...	Banana	nucleus	64.0	66.06
PGSC0003DMT400078329	Potato	nucleus	63.11	66.05
Bra017451.1-P	Field mustard	nucleus	45.78	64.38
Os01t0643600-00	Rice	nucleus	64.44	63.32
TraesCS3A01G231600.1	Wheat	nucleus	62.22	63.06
TraesCS3B01G260800.1	Wheat	nucleus	61.78	62.61
TraesCS3D01G221800.1	Wheat	nucleus	61.78	62.61
Zm00001d044081_P001	Maize	nucleus	61.78	61.78
GSMUA_Achr4P13440_001	Banana	nucleus	61.78	61.23
EES03343	Sorghum	nucleus	61.33	60.0
CDY41083	Canola	nucleus	32.44	56.59
AT2G01430.1	Thale cress	plasma membrane	57.78	47.27
VIT_00s0732g00010.t01	Wine grape	nucleus	44.44	35.34
VIT_00s0299g00100.t01	Wine grape	nucleus	46.22	35.02
VIT_15s0021g01880.t01	Wine grape	nucleus	42.67	33.68
VIT_18s0001g08410.t01	Wine grape	nucleus	39.56	32.96
VIT_08s0007g06670.t01	Wine grape	nucleus	46.67	31.72
VIT_13s0156g00260.t01	Wine grape	nucleus	45.33	28.49

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100257750	wikigene:100257750	MapMan:15.5.3.1	EMBL:AM427631	ProteinID:CAN66788
ProteinID:CAN66788.1	ProteinID:CBI26907	ProteinID:CBI26907.3	ncoils:Coil	UniProt:D7T8T6	EMBL:FN595752
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100257750
wikigene:LOC100257750	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0001BE2930
ArrayExpress:VIT_01s0011g04870	EnsemblPlantsGene:VIT_01s0011g04870	EnsemblPlants:VIT_01s0011g04870.t01	RefSeq:XP_002280649	RefSeq:XP_002280649.2	RefSeq:XP_010657445.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:4488183..4491364

Molecular Weight (calculated)

25189.0 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.724

Length

225 amino acids

Sequence
(BLAST)

001: MDVIPMRSSS LELTISVPGF TSSPSLPSSA GEGVCGVRDL DINQVPLGAE EEWTTGSMED EEESGNGGPP RKKLRLSKDQ SRLLEESFRQ NHTLNPKQKE
101: ALAMQLKLRP RQVEVWFQNR RARSKLKQTE MECEYLKRWF GSLTEQNRRL QREVEELRAM KVAPPTVISP HSCEPLPAST LTMCPRCERV TTTSLGKDPT
201: NRTTSPTLSS KLPTALHSRH SSAAC

Best Arabidopsis Sequence Match ( AT2G01430.1 )
(BLAST)

001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR

Arabidopsis Description

ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.