Factsheet for Solyc06g060830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073910.2.1
Solyc01g090460.2.1
Solyc03g006800.1.1
Solyc06g060830.2.1
Solyc06g061020.2.1
Solyc06g073150.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc10g080540.1.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G16780.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT4G16780.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT4G16780.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT4G16780.1	Solyc01g090460.2.1	AT3G60390.1	21798944
AT4G16780.1	Solyc06g060830.2.1	AT4G16780.1	21798944
AT4G16780.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT4G16780.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT4G16780.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT4G16780.1	Solyc01g073910.2.1	AT5G06710.1	21798944
AT4G16780.1	Solyc10g080540.1.1	AT5G06710.1	21798944
AT4G16780.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062081	Potato	nucleus	92.62	90.49
KRH77331	Soybean	nucleus	60.07	66.79
Solyc08g078300.2.1	Tomato	nucleus	62.42	66.43
Solyc08g007270.2.1	Tomato	nucleus	59.73	64.73
VIT_00s0299g00100.t01	Wine grape	nucleus	64.43	64.65
KRH28155	Soybean	nucleus	61.07	63.86
KRH04179	Soybean	nucleus	63.42	63.21
KRH57467	Soybean	nucleus	63.09	63.09
AT4G16780.1	Thale cress	nucleus	58.39	61.27
Bra040094.1-P	Field mustard	nucleus	56.38	58.95
GSMUA_Achr2P10040_001	Banana	nucleus	55.37	56.51
GSMUA_Achr11P...	Banana	nucleus	46.64	56.28
GSMUA_Achr5P13530_001	Banana	nucleus	52.01	55.56
Solyc01g090460.2.1	Tomato	nucleus	52.01	54.2
GSMUA_Achr7P06950_001	Banana	nucleus	32.55	53.59
GSMUA_Achr4P21600_001	Banana	nucleus	49.33	53.07
GSMUA_Achr1P01670_001	Banana	nucleus	52.35	52.53
HORVU2Hr1G097940.2	Barley	nucleus	39.26	52.0
TraesCS2A01G415900.1	Wheat	nucleus	38.93	51.1
Zm00001d002754_P001	Maize	nucleus	38.59	50.66
TraesCS2B01G434900.1	Wheat	nucleus	38.93	50.43
TraesCS2D01G412900.1	Wheat	nucleus	38.59	50.0
EES12613	Sorghum	nucleus	38.93	49.79
GSMUA_Achr1P04360_001	Banana	nucleus	49.33	48.68
Os04t0548700-01	Rice	nucleus	39.6	47.77
Solyc05g008050.1.1	Tomato	nucleus	30.2	43.06
Solyc02g091930.2.1	Tomato	nucleus	38.59	42.91
Solyc02g063520.2.1	Tomato	nucleus	36.24	42.86
Os10t0561800-01	Rice	nucleus	42.62	40.84
Solyc04g077220.2.1	Tomato	nucleus	35.91	40.53
GSMUA_AchrUn_...	Banana	plastid	41.61	39.74
Solyc07g054380.1.1	Tomato	nucleus	27.52	39.61
TraesCS1D01G220900.1	Wheat	nucleus	43.29	39.57
TraesCS1A01G219200.1	Wheat	nucleus	43.62	39.51
TraesCS1B01G232700.2	Wheat	nucleus	42.95	39.14
Zm00001d029934_P001	Maize	nucleus	41.95	38.94
EER94486	Sorghum	nucleus	43.62	37.57
Solyc01g073910.2.1	Tomato	nucleus	45.3	36.99
Solyc10g080540.1.1	Tomato	nucleus	42.28	35.59
HORVU1Hr1G055930.1	Barley	nucleus	42.62	35.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009628	GO:GO:0009641
GO:GO:0009653	GO:GO:0009719	GO:GO:0009733	GO:GO:0009735	GO:GO:0009826	GO:GO:0009987
GO:GO:0010016	GO:GO:0010017	GO:GO:0010218	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007
GO:GO:0042803	GO:GO:0043565	GO:GO:0045892	GO:GO:0048364	InterPro:HD-ZIP_N	InterPro:HTH_motif
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4C6R3	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PFAM:PF04618	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF210	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g060830.2
EnsemblPlants:Solyc06g060830.2.1	UniParc:UPI000276638D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:38851262..38853158

Molecular Weight (calculated)

33908.0 Da

IEP (calculated)

8.156

GRAVY (calculated)

-0.953

Length

298 amino acids

Sequence
(BLAST)

001: MMMEKEDLGL SLSLNFPAEK RTTTTNLISL PPSSSFNNNY WTTHPPFPHS SSDRNMETRS FLKGIDVNRM PAMAAEEEEG GVSSPNSTIS SLSGNKRSER
101: EGNCTEENEM ERASSRGISD EEDGETCRKK LRLTKEQSAV LEDSFKDHHT LNPKQKLALA KRLGLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKRCVENL
201: TDENRRLQKE VQELRSLKHS PQFYMQMTPP TTLTMCPSCE RVATGPTNTP VSIPPHRVGP PHQHHQPMPL NMWDSSSTPI SQGHYGQVDT YPSLARQK

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.