Factsheet for Zm00001d029934_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d002754_P001
Zm00001d005875_P001
Zm00001d006165_P001
Zm00001d017649_P001
Zm00001d020670_P001
Zm00001d029934_P001
Zm00001d029988_P001
Zm00001d031725_P001
Zm00001d031745_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G16780.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT4G16780.1	Zm00001d002754_P001	AT4G16780.1	21798944
AT4G16780.1	Zm00001d029934_P001	AT4G16780.1	21798944
AT4G16780.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT4G16780.1	Zm00001d005875_P001	AT5G06710.1	21798944
AT4G16780.1	Zm00001d020670_P001	AT5G06710.1	21798944
AT4G16780.1	Zm00001d031745_P001	AT5G06710.1	21798944
AT4G16780.1	Zm00001d006165_P001	AT5G51910.1	21798944
AT4G16780.1	Zm00001d031725_P001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94486	Sorghum	nucleus	84.74	78.61
Os10t0561800-01	Rice	nucleus	60.12	62.06
TraesCS1D01G220900.1	Wheat	nucleus	60.44	59.51
TraesCS1B01G232700.2	Wheat	nucleus	60.44	59.33
TraesCS1A01G219200.1	Wheat	nucleus	60.44	58.97
Zm00001d002754_P001	Maize	nucleus	40.81	57.71
HORVU1Hr1G055930.1	Barley	nucleus	60.44	53.74
KRH77331	Soybean	nucleus	43.3	51.87
GSMUA_Achr4P21600_001	Banana	nucleus	42.06	48.74
GSMUA_AchrUn_...	Banana	plastid	46.73	48.08
KRH28155	Soybean	nucleus	42.37	47.72
KRH57467	Soybean	nucleus	44.24	47.65
PGSC0003DMT400067540	Potato	nucleus	40.5	47.27
Solyc08g078300.2.1	Tomato	nucleus	41.12	47.14
VIT_00s0299g00100.t01	Wine grape	nucleus	43.61	47.14
Solyc08g007270.2.1	Tomato	nucleus	39.88	46.55
KRH04179	Soybean	nucleus	43.3	46.49
GSMUA_Achr7P06950_001	Banana	nucleus	25.86	45.86
PGSC0003DMT400032546	Potato	nucleus	39.56	45.36
Bra040094.1-P	Field mustard	nucleus	39.88	44.91
AT4G16780.1	Thale cress	nucleus	39.56	44.72
GSMUA_Achr1P04360_001	Banana	nucleus	40.81	43.38
Solyc06g060830.2.1	Tomato	nucleus	38.94	41.95
PGSC0003DMT400062081	Potato	nucleus	39.25	41.31
Zm00001d038941_P001	Maize	nucleus	9.97	41.03
Zm00001d028304_P001	Maize	nucleus	37.07	40.75
Zm00001d036118_P001	Maize	nucleus	33.02	40.61
Zm00001d030191_P001	Maize	nucleus	33.02	40.46
Zm00001d045400_P001	Maize	nucleus	33.96	40.07
Zm00001d044081_P001	Maize	nucleus	28.04	40.0
Zm00001d020670_P001	Maize	nucleus	40.5	39.04
Zm00001d005875_P001	Maize	nucleus	38.63	38.15
Zm00001d047995_P001	Maize	nucleus	34.89	37.84
Zm00001d014628_P001	Maize	nucleus	23.99	34.84
Zm00001d045398_P001	Maize	nucleus	31.78	34.81
Zm00001d014629_P001	Maize	nucleus	24.3	33.33
Zm00001d014630_P001	Maize	nucleus	25.55	33.2
Zm00001d050834_P001	Maize	nucleus	32.4	31.42
Zm00001d031745_P001	Maize	plastid	42.99	31.15
Zm00001d036510_P001	Maize	nucleus	23.99	30.32
Zm00001d000303_P001	Maize	nucleus	23.36	27.88
Zm00001d009802_P001	Maize	nucleus, plastid	14.02	25.57
Zm00001d007525_P001	Maize	plasma membrane	16.51	19.2

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103637666	MapMan:15.5.3.1	UniProt:A0A1D6K8L3	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	ProteinID:ONL99862.1	PFAM:PF00046	PFAM:PF02183
PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000844A29A	EnsemblPlantsGene:Zm00001d029934	EnsemblPlants:Zm00001d029934_P001	EnsemblPlants:Zm00001d029934_T001
SEG:seg	:	:	:	:	:

Description

Homeobox-transcription factor 78Homeobox-leucine zipper protein HAT4

Coordinates

chr1:+:95220121..95221774

Molecular Weight (calculated)

34830.1 Da

IEP (calculated)

8.701

GRAVY (calculated)

-0.690

Length

321 amino acids

Sequence
(BLAST)

001: MDIMALNARD EEQYGNNHLG LGLSLSLGLG VATAAPVEVE PPPPPRQQQQ RAISVAPITS LPAPQWWKWN GPGLFFGTTM DQQQQPAAAR HGHEMPFLRG
101: VDVNRAPAGD TRRGSCSEDD EEPGGASSSP NSTLSSSLSG KRAAPARSGG EVADHTPRAG GGSDDEDSGG GSRKKLRLSK DQAAVLEESF KEHNTLNPVR
201: KQKAALAKQL NLKPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCETLTEE NRRLQREVAE LRVLKLVAPH HYARMPPPTT LTMCPSCERL ASASASADQA
301: GRAGPCWGPL PVFVDGPARR P

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.