Factsheet for Zm00001d036118_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045400_P001	Maize	nucleus	85.82	82.35
EER87812	Sorghum	nucleus	88.12	80.7
Os06t0140400-01	Rice	nucleus	64.75	66.02
TraesCS7D01G079000.1	Wheat	nucleus	58.62	56.88
TraesCS7A01G083800.1	Wheat	nucleus	57.85	56.77
TraesCS4A01G382200.1	Wheat	nucleus	57.47	56.39
Zm00001d002754_P001	Maize	nucleus	39.46	45.37
Zm00001d045398_P001	Maize	nucleus	49.43	44.03
Zm00001d038941_P001	Maize	nucleus	12.26	41.03
Zm00001d044081_P001	Maize	nucleus	32.95	38.22
Zm00001d030191_P001	Maize	nucleus	37.16	37.02
Zm00001d028304_P001	Maize	nucleus	37.55	33.56
Zm00001d014628_P001	Maize	nucleus	27.97	33.03
Zm00001d029934_P001	Maize	nucleus	40.61	33.02
Zm00001d050834_P001	Maize	nucleus	41.76	32.93
Zm00001d005875_P001	Maize	nucleus	41.0	32.92
Zm00001d047995_P001	Maize	nucleus	36.78	32.43
Zm00001d020670_P001	Maize	nucleus	40.61	31.83
Zm00001d014630_P001	Maize	nucleus	29.12	30.77
Zm00001d014629_P001	Maize	nucleus	27.2	30.34
Zm00001d036510_P001	Maize	nucleus	27.59	28.35
Zm00001d000303_P001	Maize	nucleus	27.97	27.14
Zm00001d031745_P001	Maize	plastid	42.53	25.06
Zm00001d009802_P001	Maize	nucleus, plastid	15.33	22.73
Zm00001d007525_P001	Maize	plasma membrane	20.69	19.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A1D6LKS2	ProteinID:AQK80304.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF233	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000220BC26	EnsemblPlantsGene:Zm00001d036118	EnsemblPlants:Zm00001d036118_P001	EnsemblPlants:Zm00001d036118_T001	SEG:seg

Description

Homeobox-transcription factor 60Putative homeobox DNA-binding and leucine zipper domain family protein

Coordinates

chr6:+:72944758..72946052

Molecular Weight (calculated)

27369.2 Da

IEP (calculated)

9.746

GRAVY (calculated)

-0.419

Length

261 amino acids

Sequence
(BLAST)

001: MAPQSLDLGL SLGLGVAAFQ PSFCHPAGND AAEREASPTA DERERRCSPA GSPTSSGSGK RVAAERSAGS GSGDEDDDGG ARKKLRLSKD QAAVLEECFK
101: THHTLTPKQK AALASRLGLR ARQVEVWFQN RRARTKLKQT EVDCEYLRRW CEQLAEENRR LGKEVAELRA LSAAPAPAAP LTALTMCLSC RRVSSSSCSS
201: SPPNTHAHAA AAGTGRSVAA AAATTLPAHR QFLCGFRDGG AAAAAVYGTS SALAKALRAA R

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.