Factsheet for TraesCS4A01G382200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G083800.1	Wheat	nucleus	95.86	95.86
TraesCS7D01G079000.1	Wheat	nucleus	93.98	92.94
TraesCS4A01G382300.1	Wheat	nucleus	72.18	67.37
TraesCS7A01G084000.1	Wheat	nucleus	71.8	65.64
TraesCS7A01G083900.1	Wheat	nucleus	46.24	65.08
Zm00001d045400_P001	Maize	nucleus	59.77	58.46
Zm00001d036118_P001	Maize	nucleus	56.39	57.47
Os06t0140400-01	Rice	nucleus	55.26	57.42
EER87812	Sorghum	nucleus	60.15	56.14
TraesCS4A01G382400.1	Wheat	nucleus	57.14	44.19
TraesCS2A01G415900.1	Wheat	nucleus	35.34	41.41
TraesCS6A01G120300.1	Wheat	nucleus	28.95	37.93
TraesCS3A01G231600.1	Wheat	nucleus	31.58	37.84
TraesCS4A01G059600.1	Wheat	nucleus	37.22	36.0
TraesCS7A01G423800.1	Wheat	nucleus	27.44	33.33
TraesCS6A01G120600.1	Wheat	nucleus	27.82	32.74
TraesCS1A01G219200.1	Wheat	nucleus	39.85	32.22
TraesCS1A01G372900.1	Wheat	nucleus	35.34	30.82
TraesCS5A01G232700.1	Wheat	nucleus	39.47	29.91

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF233	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS4A01G382200	EnsemblPlants:TraesCS4A01G382200.1	TIGR:cd00086	SEG:seg	:

Description

No Description!

Coordinates

chr4A:+:660452213..660453124

Molecular Weight (calculated)

28239.5 Da

IEP (calculated)

9.388

GRAVY (calculated)

-0.489

Length

266 amino acids

Sequence
(BLAST)

001: MAPQSLDLGL SLGLGLVSRP SQPSFWYSGG NVAADQEVGP TPTAAAVEER RCSPGSPASS GSGSGLKRGA ERSAGSGDED QDDDGGNARK KLRLSKDQAA
101: VLEECFKTHH TLTPKQKLAL ANSLGLRPRQ VEVWFQNRRA RTKLKQTEVD CEYMKRWCEQ LAEQNRRLEK EVAELRALKA APPAHNGAAA GPLTTLTMCL
201: SCKRVASTSS ASACTVPSFS ANAGIGMPMP SPVAQPEHRQ FFCGFRDTGA AYGGPAGLTK VVKAAR

Best Arabidopsis Sequence Match ( AT2G44910.1 )
(BLAST)

001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR

Arabidopsis Description

ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.