Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0674000-01 | |
| Os04t0386300-01 | |
| Os05t0560600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64813.1 | Os04t0386300-01 | AT3G48550.1 | 21798944 |
| AT5G64813.1 | Os01t0674000-01 | AT3G58630.1 | 21798944 |
| AT5G64813.1 | Os05t0560600-01 | AT3G58630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95186 | Sorghum | cytosol, plastid | 83.14 | 82.89 |
| Zm00001d047945_P002 | Maize | cytosol, plastid | 82.25 | 82.01 |
| TraesCS4A01G071800.1 | Wheat | cytosol, plastid | 81.95 | 81.71 |
| TraesCS4D01G228600.2 | Wheat | cytosol | 81.36 | 79.71 |
| TraesCS4B01G227700.1 | Wheat | cytosol | 81.07 | 79.42 |
| Os10t0135200-01 | Rice | cytosol | 77.22 | 76.09 |
| HORVU4Hr1G063900.7 | Barley | cytosol | 80.47 | 73.91 |
| GSMUA_Achr10P... | Banana | cytosol | 64.5 | 65.27 |
| GSMUA_Achr2P16850_001 | Banana | cytosol | 64.2 | 64.39 |
| GSMUA_Achr6P00810_001 | Banana | cytosol | 63.02 | 63.02 |
| PGSC0003DMT400080131 | Potato | cytosol | 60.35 | 61.08 |
| KRH43322 | Soybean | cytosol | 60.06 | 60.96 |
| Solyc04g051700.2.1 | Tomato | cytosol | 60.06 | 60.96 |
| AT5G64813.1 | Thale cress | cytosol | 61.24 | 60.53 |
| KRH59455 | Soybean | cytosol | 60.06 | 60.42 |
| CDY18693 | Canola | cytosol | 60.65 | 59.94 |
| VIT_18s0001g02170.t01 | Wine grape | cytosol | 59.17 | 59.7 |
| Bra037797.1-P | Field mustard | cytosol | 60.35 | 59.65 |
| VIT_07s0031g01700.t01 | Wine grape | cytosol | 59.17 | 59.52 |
| CDX81260 | Canola | cytosol | 60.06 | 59.36 |
| AT5G09910.1 | Thale cress | cytosol | 56.8 | 57.66 |
| CDY14513 | Canola | plasma membrane | 61.83 | 56.64 |
| Bra024329.1-P | Field mustard | cytosol | 61.83 | 56.03 |
| CDY08848 | Canola | cytosol | 61.54 | 55.91 |
| KRH04620 | Soybean | extracellular | 11.24 | 35.51 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:4332217 | ProteinID:ABF94904.1 | ProteinID:BAF11436.1 | ProteinID:BAS83206.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:Os03g0242200 | EnsemblPlants:Os03t0242200-01 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| ScanProsite:PS00675 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF492 | UniProt:Q10P96 | SMART:SM00175 |
| SUPFAM:SSF52540 | InterPro:Sigma_54_int_dom_ATP-bd_1 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0000DB490B |
| RefSeq:XP_015632917.1 | SEG:seg | : | : | : | : |
Description
Ras GTPase family protein. (Os03t0242200-01)
Coordinates
chr3:+:7514225..7517543
Molecular Weight (calculated)
36823.4 Da
IEP (calculated)
8.941
GRAVY (calculated)
-0.328
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWKDSGGRS SGGGGGLEQN GVGPFGQVRV LVVGDSGVGK SSLVHLILKG SAIARPAQTV GCAVGVKHIT YGSAGGSSNN IISDVQRNFF VELWDVSGHE
101: RYRTCRSIFY TQINGVIFVY DLSQRKTKTN LNKWAVEVAE TGTFSAPLGS GGPGGLPVPY LVIANKVDLV PRDGSRVSSG SLVDFARQWV EKQGLLPSSE
201: ELPLTDSFPG NSGLLSAAKE ARYDKEAVIK FFRMLIRRRF FSNEPAAPSP WSLTPREDSI LPVETLKDEV DSFQRKSGED FMYKGVNPLP AQRNLASPPD
301: LSPQQPVFSL DNYRYHRYSS PSLPDVSSSR TSREDIDV
101: RYRTCRSIFY TQINGVIFVY DLSQRKTKTN LNKWAVEVAE TGTFSAPLGS GGPGGLPVPY LVIANKVDLV PRDGSRVSSG SLVDFARQWV EKQGLLPSSE
201: ELPLTDSFPG NSGLLSAAKE ARYDKEAVIK FFRMLIRRRF FSNEPAAPSP WSLTPREDSI LPVETLKDEV DSFQRKSGED FMYKGVNPLP AQRNLASPPD
301: LSPQQPVFSL DNYRYHRYSS PSLPDVSSSR TSREDIDV
001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
Arabidopsis Description
LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.