Factsheet for VIT_18s0001g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02150.t01
VIT_17s0000g01360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944
AT5G64813.1	VIT_12s0028g02150.t01	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g01700.t01	Wine grape	cytosol	76.12	75.89
Solyc04g051700.2.1	Tomato	cytosol	72.84	73.27
KRH59455	Soybean	cytosol	73.13	72.92
PGSC0003DMT400080131	Potato	cytosol	72.54	72.75
KRH43322	Soybean	cytosol	71.94	72.37
AT5G64813.1	Thale cress	cytosol	72.24	70.76
GSMUA_Achr2P16850_001	Banana	cytosol	70.45	70.03
GSMUA_Achr10P...	Banana	cytosol	68.66	68.86
CDY18693	Canola	cytosol	69.85	68.42
Bra037797.1-P	Field mustard	cytosol	69.55	68.13
CDX81260	Canola	cytosol	69.25	67.84
GSMUA_Achr6P00810_001	Banana	cytosol	66.87	66.27
CDY14513	Canola	plasma membrane	72.84	66.12
AT5G09910.1	Thale cress	cytosol	65.67	66.07
Bra024329.1-P	Field mustard	cytosol	72.54	65.15
CDY08848	Canola	cytosol	71.64	64.52
Os10t0135200-01	Rice	cytosol	65.97	64.43
EER91775	Sorghum	cytosol	65.07	64.31
TraesCS1B01G205000.1	Wheat	cytosol	62.39	62.02
TraesCS1D01G166300.1	Wheat	cytosol	62.09	61.72
HORVU1Hr1G045310.7	Barley	cytosol	61.49	61.13
Zm00001d047945_P002	Maize	cytosol, plastid	61.49	60.77
Os03t0242200-01	Rice	cytosol	59.7	59.17
EER95186	Sorghum	cytosol, plastid	59.7	59.0
TraesCS4A01G071800.1	Wheat	cytosol, plastid	59.4	58.7
TraesCS4B01G227700.1	Wheat	cytosol	59.1	57.39
TraesCS4D01G228600.2	Wheat	cytosol	59.1	57.39
HORVU4Hr1G063900.7	Barley	cytosol	59.7	54.35
TraesCS1A01G172300.2	Wheat	cytosol	59.1	52.66
Zm00001d014330_P014	Maize	plastid	59.4	46.06
KRH04620	Soybean	extracellular	13.43	42.06

Protein Annotations

EntrezGene:100247674	wikigene:100247674	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI29347	ProteinID:CBI29347.3
UniProt:D7TFS4	EMBL:FN595772	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EntrezGene:LOC100247674	wikigene:LOC100247674	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	ScanProsite:PS00675	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492
SMART:SM00175	SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTPase	TIGR:TC70420	UniParc:UPI00015CD2AA
ArrayExpress:VIT_18s0001g02170	EnsemblPlantsGene:VIT_18s0001g02170	EnsemblPlants:VIT_18s0001g02170.t01	unigene:Vvi.12085	RefSeq:XP_002264573	RefSeq:XP_002264573.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18_random:-:2543256..2556035

Molecular Weight (calculated)

36838.4 Da

IEP (calculated)

9.491

GRAVY (calculated)

-0.527

Length

335 amino acids

Sequence
(BLAST)

001: MFWRERERES EERSGGGPPF GQVRVLVVGD SGVGKTSLVH LIIKGSSISR PPQTIGCMVG IKHLTYGSSS SSSNSNKGNT ERDFFVELWD VSGHERYKDC
101: RSLFYSQING IIFVHDLSQK RTKTSLQKWA SEIAGNGTFS APLGSAGPCG LPVPFIVIGN KVDIATKEGQ RGSSGNLVDV ARQWVEKQGL LPSSEELPLT
201: ESFPGSGGLI AAAKEARFDK EAVKKFFLML IRRRYFSNEL PAPNPWSSSP FEGPAPHSSN NLSDDDVFHM NTSLSGDPYK YNILPPLPAR NYMPPSAQRP
301: QQPVSISDNY NLPRFTRTES PNSSNSRSKR ADINI

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.