Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G166300.1 | Wheat | cytosol | 81.65 | 91.1 |
TraesCS1B01G205000.1 | Wheat | cytosol | 80.32 | 89.61 |
HORVU1Hr1G045310.7 | Barley | cytosol | 80.05 | 89.32 |
EER91775 | Sorghum | cytosol | 70.74 | 78.47 |
Os10t0135200-01 | Rice | cytosol | 71.01 | 77.84 |
TraesCS4A01G071800.1 | Wheat | cytosol, plastid | 59.04 | 65.49 |
GSMUA_Achr10P... | Banana | cytosol | 56.91 | 64.07 |
GSMUA_Achr2P16850_001 | Banana | cytosol | 56.38 | 62.91 |
Solyc04g051700.2.1 | Tomato | cytosol | 55.59 | 62.76 |
PGSC0003DMT400080131 | Potato | cytosol | 55.59 | 62.57 |
KRH43322 | Soybean | cytosol | 54.26 | 61.26 |
KRH59455 | Soybean | cytosol | 54.26 | 60.71 |
Bra037797.1-P | Field mustard | cytosol | 55.05 | 60.53 |
CDY18693 | Canola | cytosol | 55.05 | 60.53 |
AT5G64813.1 | Thale cress | cytosol | 54.79 | 60.23 |
CDX81260 | Canola | cytosol | 54.26 | 59.65 |
VIT_07s0031g01700.t01 | Wine grape | cytosol | 53.19 | 59.52 |
Zm00001d014330_P014 | Maize | plastid | 68.09 | 59.26 |
VIT_18s0001g02170.t01 | Wine grape | cytosol | 52.66 | 59.1 |
GSMUA_Achr6P00810_001 | Banana | cytosol | 52.93 | 58.88 |
AT5G09910.1 | Thale cress | cytosol | 52.13 | 58.86 |
CDY14513 | Canola | plasma membrane | 55.85 | 56.91 |
Bra024329.1-P | Field mustard | cytosol | 55.85 | 56.3 |
CDY08848 | Canola | cytosol | 55.59 | 56.18 |
KRH04620 | Soybean | extracellular | 10.64 | 37.38 |
Protein Annotations
EnsemblPlants:TraesCS1A01G172300.2 | EnsemblPlantsGene:TraesCS1A01G172300 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | InterPro:Small_GTPase |
PANTHER:PTHR24073 | PANTHER:PTHR24073:SF492 | PFAM:PF00071 | PFscan:PS51419 | SEG:seg | SMART:SM00175 |
SUPFAM:SSF52540 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:308206107..308210789
Molecular Weight (calculated)
41270.0 Da
IEP (calculated)
9.746
GRAVY (calculated)
-0.391
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDMEVDLQA LGELVGALQR VSMATSYTLE AKCPSGTPWH LAHPSRLPGP TQLRVPSCLQ RTCSRSTKTR APGVGKSSLA RLILQGSAVA RPTQTIGCTV
101: DVKHITYGSP GSSSNSIVGD AERNFFVELW DVSGHDRYRD CRSLFYSQIN GVIFVYDLSQ RKTKTNLSKW AVEVAESGTF SAPLGSGGPG GLPVPYLVIA
201: NKVDIAPRDG RRVSSGNLID VARQWVDKQG LLPSSEELPL VDSFPGNSGL LTAAKEARYD KEAVVKFFRM LIRRRYFSNE LPAPSPWSLT PRGDTILPVE
301: TTNDEELFKR KSYGGQRYKY NGVAPLSAQQ NVTLPLTPSP QQPMSSSAEN YRYHRFSSSA IPDKNSSRTS RLDINL
101: DVKHITYGSP GSSSNSIVGD AERNFFVELW DVSGHDRYRD CRSLFYSQIN GVIFVYDLSQ RKTKTNLSKW AVEVAESGTF SAPLGSGGPG GLPVPYLVIA
201: NKVDIAPRDG RRVSSGNLID VARQWVDKQG LLPSSEELPL VDSFPGNSGL LTAAKEARYD KEAVVKFFRM LIRRRYFSNE LPAPSPWSLT PRGDTILPVE
301: TTNDEELFKR KSYGGQRYKY NGVAPLSAQQ NVTLPLTPSP QQPMSSSAEN YRYHRFSSSA IPDKNSSRTS RLDINL
001: MRFWRERGRE NKEHMVAPLC GQIRVLVVGD SGVGKSSLVH LIVKGSSIVR PSQTIGCTVG VKHLTYASPA SSSSIIKGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR TTKTNLQKWA GEVSVTGEFS APLSSGGPGG LPVPYIVIGN KADIAAKGGT NGSSGNLVDA ARHWVEKQGL LPHSDELPLS
201: ESFPSNVGLI MAAKEARYDK EALTKIFHML IRRRYFSDEL PSPSSAWSLS HAPSQRLDEG TSDEDQFYKR TSLREGDAYK YNTLPQHNLM QSPTLYPQQP
301: PDRYNYAIPR FSLSSVEETS NGNGRSKRMD INV
101: RSLFYSQING VIFVHDLSQR TTKTNLQKWA GEVSVTGEFS APLSSGGPGG LPVPYIVIGN KADIAAKGGT NGSSGNLVDA ARHWVEKQGL LPHSDELPLS
201: ESFPSNVGLI MAAKEARYDK EALTKIFHML IRRRYFSDEL PSPSSAWSLS HAPSQRLDEG TSDEDQFYKR TSLREGDAYK YNTLPQHNLM QSPTLYPQQP
301: PDRYNYAIPR FSLSSVEETS NGNGRSKRMD INV
Arabidopsis Description
LIP2Small GTPase-like protein LIP2 [Source:UniProtKB/Swiss-Prot;Acc:F4KFD8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.