Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18693 | Canola | cytosol | 97.37 | 97.37 |
| AT5G64813.1 | Thale cress | cytosol | 90.94 | 90.94 |
| CDY14513 | Canola | plasma membrane | 91.81 | 85.09 |
| CDY08848 | Canola | cytosol | 91.23 | 83.87 |
| KRH59455 | Soybean | cytosol | 74.27 | 75.6 |
| KRH43322 | Soybean | cytosol | 73.39 | 75.38 |
| Solyc04g051700.2.1 | Tomato | cytosol | 70.76 | 72.67 |
| PGSC0003DMT400080131 | Potato | cytosol | 70.47 | 72.16 |
| VIT_07s0031g01700.t01 | Wine grape | cytosol | 70.18 | 71.43 |
| GSMUA_Achr10P... | Banana | cytosol | 68.42 | 70.06 |
| VIT_18s0001g02170.t01 | Wine grape | cytosol | 67.84 | 69.25 |
| GSMUA_Achr2P16850_001 | Banana | cytosol | 68.13 | 69.14 |
| EER91775 | Sorghum | cytosol | 64.91 | 65.49 |
| GSMUA_Achr6P00810_001 | Banana | cytosol | 64.04 | 64.79 |
| Os10t0135200-01 | Rice | cytosol | 64.04 | 63.85 |
| TraesCS1D01G166300.1 | Wheat | cytosol | 62.28 | 63.2 |
| TraesCS1B01G205000.1 | Wheat | cytosol | 61.11 | 62.02 |
| HORVU1Hr1G045310.7 | Barley | cytosol | 60.82 | 61.72 |
| Os03t0242200-01 | Rice | cytosol | 59.36 | 60.06 |
| Zm00001d047945_P002 | Maize | cytosol, plastid | 59.36 | 59.88 |
| EER95186 | Sorghum | cytosol, plastid | 58.77 | 59.29 |
| TraesCS4A01G071800.1 | Wheat | cytosol, plastid | 57.6 | 58.11 |
| TraesCS4B01G227700.1 | Wheat | cytosol | 57.89 | 57.39 |
| TraesCS4D01G228600.2 | Wheat | cytosol | 57.6 | 57.1 |
| TraesCS1A01G172300.2 | Wheat | cytosol | 59.65 | 54.26 |
| HORVU4Hr1G063900.7 | Barley | cytosol | 57.31 | 53.26 |
| Zm00001d014330_P014 | Maize | plastid | 60.23 | 47.69 |
| KRH04620 | Soybean | extracellular | 14.33 | 45.79 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CWK6 | EnsemblPlants:CDX81260 | ProteinID:CDX81260 | ProteinID:CDX81260.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00134758001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | ScanProsite:PS00675 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF492 | SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 |
| InterPro:Sigma_54_int_dom_ATP-bd_1 | InterPro:Small_GTPase | UniParc:UPI0004EEA6DB | SEG:seg | : | : |
Description
BnaC09g06710D
Coordinates
chrLK031824:+:509677..511603
Molecular Weight (calculated)
37675.2 Da
IEP (calculated)
9.247
GRAVY (calculated)
-0.536
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFWRERERE SKEQILAPLC GQVRVLVVGD SGVGKTSLVQ LINRGCSIQR PSQTIGCSVG VKHITYGSPG SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGGPG GLPVPYIVVG NKADIAAKEG TKGSSGNLVD AARHWVEKQG LLSSSEDLPL
201: FDSFPGNAGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE QPAAAPWSIP TSSSQRLDEI TSDEDQFYKR TSFHGDPYKY NNTLPPLAAQ RNLTSPPPTL
301: YPQQQQPVST PDSYAVPRFS LSSLQETSNN GSGRSKRMNI NV
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGGPG GLPVPYIVVG NKADIAAKEG TKGSSGNLVD AARHWVEKQG LLSSSEDLPL
201: FDSFPGNAGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE QPAAAPWSIP TSSSQRLDEI TSDEDQFYKR TSFHGDPYKY NNTLPPLAAQ RNLTSPPPTL
301: YPQQQQPVST PDSYAVPRFS LSSLQETSNN GSGRSKRMNI NV
001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
Arabidopsis Description
LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.