CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX84994
CDX84995
CDX87453
CDY01754
CDY03849
CDY24397
CDY24398
CDY24399
CDY28576
CDY28577
CDY31621
CDY35849
CDY36104
CDY42101
CDY51132
CDY68276
CDY68484
CDY69266
CDY69930
CDY70440
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	CDX70737	AT1G25490.1	21798944
AT2G19430.1	CDX84994	AT1G25490.1	21798944
AT2G19430.1	CDX84995	AT1G25490.1	21798944
AT2G19430.1	CDX87453	AT1G25490.1	21798944
AT2G19430.1	CDY03849	AT1G25490.1	21798944
AT2G19430.1	CDY24397	AT1G25490.1	21798944
AT2G19430.1	CDY24398	AT1G25490.1	21798944
AT2G19430.1	CDY24399	AT1G25490.1	21798944
AT2G19430.1	CDY31621	AT1G25490.1	21798944
AT2G19430.1	CDY35849	AT1G25490.1	21798944
AT2G19430.1	CDY36104	AT1G25490.1	21798944
AT2G19430.1	CDY42101	AT1G25490.1	21798944
AT2G19430.1	CDY51132	AT1G25490.1	21798944
AT2G19430.1	CDY70440	AT1G25490.1	21798944
AT2G19430.1	CDY01754	AT1G69690.1	21798944
AT2G19430.1	CDY28576	AT1G69690.1	21798944
AT2G19430.1	CDY28577	AT1G69690.1	21798944
AT2G19430.1	CDY68276	AT1G69690.1	21798944
AT2G19430.1	CDY68484	AT4G05420.1	18223036
AT2G19430.1	CDY69266	AT4G05420.1	18223036
AT2G19430.1	CDY69930	AT4G05420.1	18223036
AT2G19430.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039002.1-P	Field mustard	cytosol	96.65	96.65
CDY60743	Canola	cytosol	75.14	88.49
AT2G19430.1	Thale cress	cytosol	88.27	86.1
VIT_11s0016g01910.t01	Wine grape	cytosol	65.08	62.63
KRH19216	Soybean	nucleus	64.53	61.76
KRH02681	Soybean	nucleus	63.97	61.23
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	13.13	58.02
KRH72217	Soybean	cytosol	17.32	52.99
EER98796	Sorghum	cytosol	52.23	49.08
TraesCS5A01G195000.2	Wheat	cytosol	51.96	48.69
Zm00001d020234_P001	Maize	cytosol	51.4	48.29
GSMUA_Achr8P24950_001	Banana	nucleus	55.59	48.18
TraesCS5B01G190400.1	Wheat	cytosol	51.68	47.93
TraesCS5D01G198200.1	Wheat	cytosol	51.4	47.92
Os09t0363600-01	Rice	nucleus	36.87	47.31
HORVU5Hr1G057500.2	Barley	plastid	47.49	43.48
Solyc07g040790.2.1	Tomato	nucleus	50.28	41.38

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	UniProt:A0A078JNG9	EnsemblPlants:CDY66907	ProteinID:CDY66907	ProteinID:CDY66907.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00056828001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR42968
PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE926F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaCnng52800DBnaCnng52800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNG9]

Coordinates

chrLK035571:+:1895..5089

Molecular Weight (calculated)

38977.8 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.226

Length

358 amino acids

Sequence
(BLAST)

001: MYGDATNWNE DEYRESILKE REIQTRTVFR TAWAPNPNPD AFVVASSDGT LAFHSMSSLV SQSAAFGYSK GEDFMVAVPE GMVRAHEGPA YDVKFYGEDE
101: DALLLSCGDD GRVRGWKWRD FADSTENHVK PLLELTNPQH KGPWGALSPM PEINAISVDP QSGSVYTAAG DSCAYCWDME SGKIKMIFKG HSDYLHSLVS
201: RSSASQILTG SEDGTARIWD CKTGKCIKVI GCQEKKSRFR ISSMALDESE SWLACGQGKN IAVWNLPASE CVSTISSPAH VQDVMFDEKQ ILSVGAEPLL
301: RRFDLNGALL SQIQCAPSSA FSVSLHPTGV VAVGGYGGLV DVISQFGSHL CTFRSSSL

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.