CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99108
KRH25071
KRH43086
KRH45889
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	KRG99108	AT1G69690.1	21798944
AT2G19430.1	KRH45889	AT1G69690.1	21798944
AT2G19430.1	KRH25071	AT4G05420.1	18223036
AT2G19430.1	KRH43086	AT4G05420.1	18223036
AT2G19430.1	KRH59212	AT4G05420.1	18223036
AT2G19430.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19216	Soybean	nucleus	86.32	27.01
KRH02681	Soybean	nucleus	85.47	26.74
Os09t0363600-01	Rice	nucleus	61.54	25.81
VIT_11s0016g01910.t01	Wine grape	cytosol	70.94	22.31
CDY60743	Canola	cytosol	54.7	21.05
Solyc07g040790.2.1	Tomato	nucleus	70.09	18.85
GSMUA_Achr8P24950_001	Banana	nucleus	65.81	18.64
TraesCS5A01G195000.2	Wheat	cytosol	60.68	18.59
TraesCS5D01G198200.1	Wheat	cytosol	60.68	18.49
TraesCS5B01G190400.1	Wheat	cytosol	60.68	18.39
EER98796	Sorghum	cytosol	58.97	18.11
AT2G19430.1	Thale cress	cytosol	56.41	17.98
HORVU5Hr1G057500.2	Barley	plastid	59.83	17.9
Zm00001d020234_P001	Maize	cytosol	57.27	17.59
CDY66907	Canola	cytosol	52.99	17.32
Bra039002.1-P	Field mustard	cytosol	52.99	17.32
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	0.0	0.0

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	UniProt:A0A0R0L4P0	EMBL:ACUP02001190	EnsemblPlantsGene:GLYMA_02G198600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH72217
ProteinID:KRH72217	ProteinID:KRH72217.1	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR42968	PANTHER:PTHR42968:SF3
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006ED4E92	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:38037597..38038959

Molecular Weight (calculated)

12649.0 Da

IEP (calculated)

7.080

GRAVY (calculated)

0.058

Length

117 amino acids

Sequence
(BLAST)

001: SFRGPWGALS PIPENNVIAV NTQVWGSVFA ASGDSCAYCW DVETGKVKMV FKGHMDYLYC IVARNSSNQI ITGSEDGTTL IWCTQVIDPT RDLKLKGSTS
101: WVGCVALDAS GSRLVRA

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.