Factsheet for Os09t0363600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72217	Soybean	cytosol	25.81	61.54
EER98796	Sorghum	cytosol	82.8	60.63
TraesCS5A01G195000.2	Wheat	cytosol	82.08	59.95
Zm00001d020234_P001	Maize	cytosol	80.65	59.06
TraesCS5D01G198200.1	Wheat	cytosol	81.0	58.85
TraesCS5B01G190400.1	Wheat	cytosol	81.36	58.81
HORVU5Hr1G057500.2	Barley	plastid	64.16	45.78
VIT_11s0016g01910.t01	Wine grape	cytosol	57.35	43.01
KRH02681	Soybean	nucleus	56.99	42.51
KRH19216	Soybean	nucleus	55.91	41.71
GSMUA_Achr8P24950_001	Banana	nucleus	56.27	38.01
AT2G19430.1	Thale cress	cytosol	48.75	37.06
CDY66907	Canola	cytosol	47.31	36.87
Bra039002.1-P	Field mustard	cytosol	46.59	36.31
CDY60743	Canola	cytosol	39.43	36.18
Solyc07g040790.2.1	Tomato	nucleus	50.18	32.18
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	0.72	2.47

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	EMBL:AK111628	ProteinID:BAD23413.1	ProteinID:BAD33714.1	ProteinID:BAF24907.1
ProteinID:BAT07716.1	GO:GO:0000347	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009788	GO:GO:0009987
GO:GO:0010267	GO:GO:0016567	GO:GO:0019538	GO:GO:0031047	GO:GO:0040029	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os09g0363600	EnsemblPlants:Os09t0363600-01	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	UniProt:Q6K4E0
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00003B0636	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

OsWD40-171WD40/YVTN repeat-like domain containing protein. (Os09t0363600-01);Similar to transducin family protein / WD-40 repeat family protein. (Os09t0363600-02)

Coordinates

chr9:-:11909067..11912702

Molecular Weight (calculated)

30298.3 Da

IEP (calculated)

5.302

GRAVY (calculated)

-0.257

Length

279 amino acids

Sequence
(BLAST)

001: MAAAALAGMD ARGWDEAAYR RGILRERDLS CRTLFRAVFF DHHDDDPDVL LAAASSDGSL ASFSLSSCIS SSSSHPTPQT HPDAAVSLVD PVCIVQAHSG
101: PAYDVRFYPD SQQPLLFSGG DDGRLRGWRW HEMQSCLVPL SLQGDHLEPV LDLVNPQHEG PWGARSPIPE NNAIAINKQE GSVYAAAGDA CAYCWDVESG
201: KCKMTFKGHT DYLHSIAVRE ANRQVVTGSE DGTARIWDCR SGKCTQVIRP VKNKIFEGSW VSCVAIDASE SWLVGCTSS

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.