Factsheet for TraesCS5B01G190400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT2G19430.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT2G19430.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT2G19430.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT2G19430.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G198200.1	Wheat	cytosol	98.19	98.7
TraesCS5A01G195000.2	Wheat	cytosol	96.37	97.38
Os09t0363600-01	Rice	nucleus	58.81	81.36
EER98796	Sorghum	cytosol	77.72	78.74
HORVU5Hr1G057500.2	Barley	plastid	78.24	77.24
Zm00001d020234_P001	Maize	cytosol	74.61	75.59
KRH72217	Soybean	cytosol	18.39	60.68
VIT_11s0016g01910.t01	Wine grape	cytosol	55.96	58.06
KRH02681	Soybean	nucleus	53.63	55.35
CDY60743	Canola	cytosol	43.26	54.93
KRH19216	Soybean	nucleus	53.11	54.81
GSMUA_Achr8P24950_001	Banana	nucleus	57.51	53.75
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	11.14	53.09
CDY66907	Canola	cytosol	47.93	51.68
Bra039002.1-P	Field mustard	cytosol	47.67	51.4
AT2G19430.1	Thale cress	cytosol	46.89	49.32
Solyc07g040790.2.1	Tomato	nucleus	43.52	38.62

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	GO:GO:0000347	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009788
GO:GO:0009987	GO:GO:0010267	GO:GO:0016567	GO:GO:0019538	GO:GO:0031047	GO:GO:0040029
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS5B01G190400	EnsemblPlants:TraesCS5B01G190400.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:344310601..344317721

Molecular Weight (calculated)

41204.5 Da

IEP (calculated)

5.338

GRAVY (calculated)

-0.015

Length

386 amino acids

Sequence
(BLAST)

001: MAAATATATV QAQPGLDARE WDEAAYRRGI LRERDLSCRT LFRAVFYDQR DEPDPDVLLA AASSDGSLAS FSLSSCIASS ASAHAAPQLA AAALVDPVCI
101: VQAHSGPVYD AKFYNDPIQP LLFSCGDDGH IRGWRWHEMQ SCLLPLSLQG DHVEPILDLV NPQHEGPWGA RSPIPENNAI AISKQDGSLF AAAGDACAYC
201: WDVESGKCKM TFKGHTDYLH SIAVREANHQ VVTGSEDGTA RIWDCRSGKC TQTIRPVQNK KFEGSWVGCI AIDASESWLA CGTSCGISVW SLLSNECIFN
301: ADCGAPVQDL LFDKNQILAV GAEPALSRFT INGVVVSQIK CAPPSAFSVS MHSSGMAAVA GHGGLVDVIS GFGSHLCAFR CRGLDR

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.