CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99108
KRH25071
KRH43086
KRH45889
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	KRG99108	AT1G69690.1	21798944
AT2G19430.1	KRH45889	AT1G69690.1	21798944
AT2G19430.1	KRH25071	AT4G05420.1	18223036
AT2G19430.1	KRH43086	AT4G05420.1	18223036
AT2G19430.1	KRH59212	AT4G05420.1	18223036
AT2G19430.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02681	Soybean	nucleus	95.19	95.19
KRH72217	Soybean	cytosol	27.01	86.32
VIT_11s0016g01910.t01	Wine grape	cytosol	68.18	68.55
Bra039002.1-P	Field mustard	cytosol	61.76	64.53
CDY66907	Canola	cytosol	61.76	64.53
AT2G19430.1	Thale cress	cytosol	63.1	64.31
CDY60743	Canola	cytosol	51.34	63.16
Os09t0363600-01	Rice	nucleus	41.71	55.91
TraesCS5A01G195000.2	Wheat	cytosol	54.55	53.4
TraesCS5D01G198200.1	Wheat	cytosol	54.81	53.39
EER98796	Sorghum	cytosol	54.28	53.28
TraesCS5B01G190400.1	Wheat	cytosol	54.81	53.11
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	11.5	53.09
Zm00001d020234_P001	Maize	cytosol	54.01	53.02
GSMUA_Achr8P24950_001	Banana	nucleus	56.68	51.33
HORVU5Hr1G057500.2	Barley	plastid	49.2	47.06
Solyc07g040790.2.1	Tomato	nucleus	54.28	46.67

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	EMBL:ACUP02008170	EnsemblPlantsGene:GLYMA_13G106300	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	UniProt:I1LY15	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH19216
ProteinID:KRH19216	ProteinID:KRH19216.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023CFA92	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:22056949..22064915

Molecular Weight (calculated)

40376.3 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.135

Length

374 amino acids

Sequence
(BLAST)

001: MCGDATNWDE DAYRETVLRE REIQTRTVFR TAWAPPYTSN LDTLLVASSD GSVASYSISS SVVASKLKNP FGFVNADTDE LLAEPNCFVQ AHAGPAYDVK
101: FYGDGEDALL LSCGDDGQIR GWRWKEFSSS NYSVSSQGND IKPVLDVVNP QHKGPWGALS PVPENNAIAV NTQGGSVFAA SGDSCAYCWD VETGKVKMVF
201: KGHMDYLHCI VARNSSNQII TGSEDGTTRI WDCKSGKCTQ VIDPARDLKL KGSASWVGCV ALDASESWLA CSSGRNISLW NLPASECVSK IPTRACVQDM
301: SFDNNQILTV GTDPLLNRFD MNGTILSQIQ CAPSSSFSIS LHPAGVMAVG GYGCLVDVIS QFGSHMCTFR CQCV

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.