Factsheet for Zm00001d020234_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	Zm00001d009745_P023	AT4G05420.1	18223036
AT2G19430.1	Zm00001d039165_P046	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98796	Sorghum	cytosol	93.44	93.44
Os09t0363600-01	Rice	nucleus	59.06	80.65
TraesCS5A01G195000.2	Wheat	cytosol	76.38	76.18
TraesCS5D01G198200.1	Wheat	cytosol	75.85	75.26
TraesCS5B01G190400.1	Wheat	cytosol	75.59	74.61
HORVU5Hr1G057500.2	Barley	plastid	66.14	64.45
VIT_11s0016g01910.t01	Wine grape	cytosol	56.43	57.8
KRH72217	Soybean	cytosol	17.59	57.27
KRH02681	Soybean	nucleus	53.81	54.81
CDY60743	Canola	cytosol	43.57	54.61
KRH19216	Soybean	nucleus	53.02	54.01
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	11.29	53.09
GSMUA_Achr8P24950_001	Banana	nucleus	56.96	52.54
CDY66907	Canola	cytosol	48.29	51.4
Bra039002.1-P	Field mustard	cytosol	47.51	50.56
AT2G19430.1	Thale cress	cytosol	47.77	49.59
Solyc07g040790.2.1	Tomato	nucleus	41.47	36.32

Protein Annotations

EntrezGene:103632647	MapMan:16.11.1.1.5	Gene3D:2.130.10.10	UniProt:A0A1D6I353	GO:GO:0000347	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009788	GO:GO:0009987	GO:GO:0010267	GO:GO:0016567	GO:GO:0019538
GO:GO:0031047	GO:GO:0040029	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
ProteinID:ONM54587.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR42968
PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004DEBBA6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d020234	EnsemblPlants:Zm00001d020234_P001	EnsemblPlants:Zm00001d020234_T001
SEG:seg	:	:	:	:	:

Description

THO complex subunit 6

Coordinates

chr7:-:101492829..101504525

Molecular Weight (calculated)

40851.9 Da

IEP (calculated)

5.525

GRAVY (calculated)

-0.072

Length

381 amino acids

Sequence
(BLAST)

001: MATAAAQSHP ASMDARRWDE SSYRRGILRA RDLSSRTLFR AVFFDHSDDP DTDILLAAAS SDGSLASFSL SSCISACSAT SQVETAATLV DPVCIVQAHS
101: GPAYDVRFYP DQQQPLLFSC GDDGRIKGWR WHEMQSCLVP LSLQGDHLEP ALDLVNPQHE GPWGARSPVP ENNAIAINKQ DGSILAAAGD ACAYCWDVET
201: SKCKITFKGH ADYLHSIAVR ESNRQVVTGS EDGTARIWDC RSGKCTRVIQ PGKSKAFESS WVSCVAIDPS ESWLACGTSS GISVWSLLSN ECIFNLDCHA
301: PVQDLLFDKN HILAVGAEPL LSRLTINGTV LSQVKCAPQS AFSVSIHSTG IAAVAGYGGL VDVISEVGSH LCTFGSRGLD K

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.