Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- plastid 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g021650.2.1 | |
| Solyc05g007420.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G19430.1 | Solyc05g007420.1.1 | AT1G69690.1 | 21798944 |
| AT2G19430.1 | Solyc02g021650.2.1 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60743 | Canola | cytosol | 58.02 | 15.46 |
| VIT_11s0016g01910.t01 | Wine grape | cytosol | 61.73 | 13.44 |
| Bra039002.1-P | Field mustard | cytosol | 58.02 | 13.13 |
| CDY66907 | Canola | cytosol | 58.02 | 13.13 |
| AT2G19430.1 | Thale cress | cytosol | 59.26 | 13.08 |
| EER98796 | Sorghum | cytosol | 54.32 | 11.55 |
| KRH19216 | Soybean | nucleus | 53.09 | 11.5 |
| Zm00001d020234_P001 | Maize | cytosol | 53.09 | 11.29 |
| TraesCS5A01G195000.2 | Wheat | cytosol | 53.09 | 11.26 |
| KRH02681 | Soybean | nucleus | 51.85 | 11.23 |
| TraesCS5D01G198200.1 | Wheat | cytosol | 53.09 | 11.2 |
| TraesCS5B01G190400.1 | Wheat | cytosol | 53.09 | 11.14 |
| HORVU5Hr1G057500.2 | Barley | plastid | 53.09 | 11.0 |
| GSMUA_Achr8P24950_001 | Banana | nucleus | 51.85 | 10.17 |
| Solyc07g040790.2.1 | Tomato | nucleus | 13.58 | 2.53 |
| Os09t0363600-01 | Rice | nucleus | 2.47 | 0.72 |
| KRH72217 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc07g040780.2.1 | EnsemblPlantsGene:Solyc07g040780.2 | PANTHER:PTHR42968 | PANTHER:PTHR42968:SF3 | UniParc:UPI000276B627 | UniProt:K4CDV5 |
| MapMan:16.11.1.1.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:49713792..49714931
Molecular Weight (calculated)
8469.5 Da
IEP (calculated)
8.798
GRAVY (calculated)
0.478
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MLKRVLSVGA EPLLSRFDLN GGIISQIPCA PQSLFSISAH PSGVTAVAGY GGIVDIVSQF GSHLSTFQCR GVQKGLPMQL I
001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL
Arabidopsis Description
THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.