Factsheet for GSMUA_Achr6P29040_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29020_001	Banana	mitochondrion	89.25	80.59
GSMUA_Achr9P08270_001	Banana	cytosol, plastid	77.85	72.87
GSMUA_Achr2P05600_001	Banana	plastid	67.1	65.61
GSMUA_Achr9P08260_001	Banana	plastid	46.58	63.27
KRH09280	Soybean	plastid	47.88	43.49
CDX88032	Canola	cytosol	47.23	43.28
KRH38783	Soybean	plastid	47.23	43.03
CDX80370	Canola	cytosol	46.91	42.99
Bra009691.1-P	Field mustard	cytosol	46.58	42.69
KRH09281	Soybean	plastid	46.58	42.31
VIT_07s0130g00340.t01	Wine grape	plastid	45.28	41.49
VIT_07s0130g00320.t01	Wine grape	plastid	45.28	41.49
AT5G23530.1	Thale cress	cytosol	44.95	41.19
Bra026494.1-P	Field mustard	cytosol	44.3	40.6
CDY16855	Canola	cytosol	44.3	40.6
GSMUA_Achr11P...	Banana	cytosol	40.39	40.52
Solyc10g054780.1.1	Tomato	nucleus	44.95	39.88
CDX87169	Canola	cytosol	43.32	39.7
KRH09282	Soybean	extracellular	42.67	39.58
KRH38784	Soybean	plastid	43.97	37.4
GSMUA_Achr3P24930_001	Banana	cytosol	28.99	29.09
GSMUA_Achr6P16090_001	Banana	cytosol	28.99	28.99
GSMUA_Achr5P27430_001	Banana	cytosol	28.99	28.9
GSMUA_Achr8P05910_001	Banana	cytosol	28.66	28.85
GSMUA_Achr10P...	Banana	cytosol	28.66	28.39
GSMUA_Achr5P27450_001	Banana	mitochondrion	28.99	26.33
GSMUA_Achr6P32510_001	Banana	cytosol	24.1	25.61
GSMUA_Achr4P04980_001	Banana	cytosol	26.71	25.39
GSMUA_Achr7P16460_001	Banana	cytosol	26.38	25.0
GSMUA_Achr2P01900_001	Banana	cytosol	22.48	22.19
GSMUA_Achr8P05900_001	Banana	cytosol	19.22	21.61
GSMUA_Achr6P16980_001	Banana	mitochondrion	20.52	21.28
GSMUA_Achr10P...	Banana	cytosol	18.89	19.66

Protein Annotations

EnsemblPlants:GSMUA_Achr6P29040_001	EnsemblPlants:GSMUA_Achr6T29040_001	EnsemblPlantsGene:GSMUA_Achr6G29040_001	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
PANTHER:PTHR23024	PANTHER:PTHR23024:SF331	PFAM:PF07859	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002954520
UniProt:M0TB49	MapMan:35.1	:	:	:	:

Description

Putative Probable gibberellin receptor GID1L3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29040_001]

Coordinates

chr6:+:29323404..29324480

Molecular Weight (calculated)

34270.5 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.283

Length

307 amino acids

Sequence
(BLAST)

001: MSPAAVAPPL SRTKRFVIAA VSAINDAACR SDGTVNRRLV SLLDARVAAS AKPFRGVRTA DVPVDLSRDL WFRLFVPSSV SDGERLPVIV FFHGGGFAFL
101: SPDSYLFDDV CRRICRTDGV HVLRFLEDGG LLYADPSAAD LADLSSCFLV GDSAGGNIVH HVARRWAADA DGGWKRLRLA GMVLIQPYFG GEERTEAELR
201: LVGAPLVSVE RTDWLWRAFL PEGADRDHEA SNDWQRRYYK GLRARGKSAR LVEYPEAFHS FYAFPDLKQS TVLMEEIKSF VDSHRPRKEE DRERSGGGDK
301: HSNIEEW

Best Arabidopsis Sequence Match ( AT5G23530.1 )
(BLAST)

001: MATDSQPNQK LTLPLKTRIA LTVISTMTDN AQRPDGTINR RFLRLFDFRA PPNPKPVNIV STSDFVVDQS RDLWFRLYTP HVSGDKIPVV VFFHGGGFAF
101: LSPNAYPYDN VCRRFARKLP AYVISVNYRL APEHRYPAQY DDGFDALKYI EENHGSILPA NADLSRCFFA GDSAGGNIAH NVAIRICREP RSSFTAVKLI
201: GLISIQPFFG GEERTEAEKQ LVGAPLVSPD RTDWCWKAMG LNRDHEAVNV GGPNAVDISG LDYPETMVVV AGFDPLKDWQ RSYYEWLKLC GKKATLIEYP
301: NMFHAFYIFP ELPEAGQLIM RIKDFVDERV ASLSA

Arabidopsis Description

CXE18Probable carboxylesterase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.