Factsheet for GSMUA_Achr6P29020_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29040_001	Banana	plastid	80.59	89.25
GSMUA_Achr9P08270_001	Banana	cytosol, plastid	71.76	74.39
GSMUA_Achr2P05600_001	Banana	plastid	61.47	66.56
GSMUA_Achr9P08260_001	Banana	plastid	42.35	63.72
KRH38783	Soybean	plastid	44.41	44.81
KRH09280	Soybean	plastid	44.12	44.38
KRH09281	Soybean	plastid	43.82	44.08
VIT_07s0130g00340.t01	Wine grape	plastid	42.94	43.58
VIT_07s0130g00320.t01	Wine grape	plastid	42.94	43.58
CDX88032	Canola	cytosol	42.65	43.28
GSMUA_Achr11P...	Banana	cytosol	38.82	43.14
AT5G23530.1	Thale cress	cytosol	42.35	42.99
CDX80370	Canola	cytosol	42.35	42.99
Bra009691.1-P	Field mustard	cytosol	42.06	42.69
Solyc10g054780.1.1	Tomato	nucleus	42.35	41.62
Bra026494.1-P	Field mustard	cytosol	40.59	41.19
CDY16855	Canola	cytosol	40.59	41.19
CDX87169	Canola	cytosol	40.0	40.6
KRH09282	Soybean	extracellular	39.41	40.48
KRH38784	Soybean	plastid	41.76	39.34
GSMUA_Achr8P05910_001	Banana	cytosol	29.12	32.46
GSMUA_Achr3P24930_001	Banana	cytosol	29.12	32.35
GSMUA_Achr5P27430_001	Banana	cytosol	29.12	32.14
GSMUA_Achr6P16090_001	Banana	cytosol	28.82	31.92
GSMUA_Achr10P...	Banana	cytosol	28.53	31.29
GSMUA_Achr5P27450_001	Banana	mitochondrion	29.12	29.29
GSMUA_Achr4P04980_001	Banana	cytosol	25.0	26.32
GSMUA_Achr6P32510_001	Banana	cytosol	22.35	26.3
GSMUA_Achr7P16460_001	Banana	cytosol	25.0	26.23
GSMUA_Achr2P01900_001	Banana	cytosol	21.47	23.47
GSMUA_Achr8P05900_001	Banana	cytosol	18.53	23.08
GSMUA_Achr6P16980_001	Banana	mitochondrion	20.0	22.97
GSMUA_Achr10P...	Banana	cytosol	17.94	20.68

Protein Annotations

EnsemblPlants:GSMUA_Achr6P29020_001	EnsemblPlants:GSMUA_Achr6T29020_001	EnsemblPlantsGene:GSMUA_Achr6G29020_001	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:CarbesteraseB
InterPro:IPR029058	PANTHER:PTHR23024	PANTHER:PTHR23024:SF331	PFAM:PF00135	PFAM:PF07859	SUPFAM:SSF53474
UniParc:UPI000295E0FA	UniProt:M0TB47	MapMan:35.1	:	:	:

Description

Putative Probable gibberellin receptor GID1L3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29020_001]

Coordinates

chr6:+:29308938..29310297

Molecular Weight (calculated)

38087.6 Da

IEP (calculated)

8.783

GRAVY (calculated)

-0.171

Length

340 amino acids

Sequence
(BLAST)

001: MSPAAVAPPL SRTKRFVIAA VSAINDAACR SDGTVNRCLV SFLDARVAAS AEPFRGVRTA DVPVDLSRDL WFRLFVPSSV SDGERLPVIV FFHGGGFAFL
101: SPDSYLFDDV CRRICRTVHA LVVSVNYRLA PEHRCFLVGD SAGGNIVHHV ARRWAADADG GWKRLRLAGM VLIQPYFGGE ERTEAELRLV GAPLVTVERT
201: DWLWRAFLPE GADRDHEASN VFGPRAMGEL EEALPAAMVV VGGFDPLQDW QRRYYKGLRA RGKSARLVEY PEAFHSFYSF PDLKQSTVLM EEIKSFVDSH
301: RPRKEEDRER SGGGDKHINC LYQSSIKIKK KVFNFVLLKQ

Best Arabidopsis Sequence Match ( AT5G23530.1 )
(BLAST)

001: MATDSQPNQK LTLPLKTRIA LTVISTMTDN AQRPDGTINR RFLRLFDFRA PPNPKPVNIV STSDFVVDQS RDLWFRLYTP HVSGDKIPVV VFFHGGGFAF
101: LSPNAYPYDN VCRRFARKLP AYVISVNYRL APEHRYPAQY DDGFDALKYI EENHGSILPA NADLSRCFFA GDSAGGNIAH NVAIRICREP RSSFTAVKLI
201: GLISIQPFFG GEERTEAEKQ LVGAPLVSPD RTDWCWKAMG LNRDHEAVNV GGPNAVDISG LDYPETMVVV AGFDPLKDWQ RSYYEWLKLC GKKATLIEYP
301: NMFHAFYIFP ELPEAGQLIM RIKDFVDERV ASLSA

Arabidopsis Description

CXE18Probable carboxylesterase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.