CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69476
CDX72197
CDX93522
CDX95016
CDY06344
CDY22651
CDY27261
CDY31116
CDY32146
CDY70129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55840.1	CDX93522	AT1G09020.1	17028154
AT3G55840.1	CDX95016	AT1G09020.1	17028154
AT3G55840.1	CDY06344	AT1G09020.1	17028154
AT3G55840.1	CDY22651	AT1G09020.1	17028154
AT3G55840.1	CDY31116	AT1G09020.1	17028154
AT3G55840.1	CDY32146	AT1G09020.1	17028154
AT3G55840.1	CDX72197	AT3G55840.1	21798944
AT3G55840.1	CDY27261	AT3G55840.1	21798944
AT3G55840.1	CDX69476	AT5G16080.1	21798944
AT3G55840.1	CDY70129	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27261	Canola	cytosol	98.12	98.12
AT3G55840.1	Thale cress	cytosol, plastid	84.71	84.11
CDY20507	Canola	cytosol	32.24	69.54
CDY07047	Canola	cytosol	67.76	68.41
CDY70017	Canola	cytosol	67.29	68.1
CDX74813	Canola	cytosol	66.82	67.78
CDY61713	Canola	cytosol	67.29	67.77
CDY24933	Canola	cytosol	67.29	67.77
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	66.12	66.43
CDX68585	Canola	cytosol	12.71	65.85
CDY04614	Canola	cytosol	12.71	65.85
CDX72167	Canola	cytosol	12.47	64.63
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	57.65	51.47
KRH31120	Soybean	nucleus	54.59	50.99
KRG97765	Soybean	plastid	53.88	50.78
KRH73164	Soybean	cytosol	49.41	48.05
KRH14977	Soybean	plastid	51.53	47.0
GSMUA_Achr10P...	Banana	nucleus	47.76	46.24
GSMUA_Achr5P28920_001	Banana	cytosol	42.82	44.94
GSMUA_Achr11P...	Banana	plastid	49.41	44.4
HORVU3Hr1G111690.1	Barley	cytosol	13.88	43.7
KXG33721	Sorghum	plastid	47.53	43.07
TraesCS3D01G361800.1	Wheat	cytosol	47.29	43.04
HORVU3Hr1G084830.1	Barley	cytosol	46.82	42.61
TraesCS3A01G368800.1	Wheat	cytosol	46.82	42.61
Zm00001d042811_P001	Maize	cytosol	46.82	42.52
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	46.12	41.97
Zm00001d012321_P001	Maize	plastid	46.35	41.56
Os01t0855600-01	Rice	plasma membrane	45.88	41.14

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	GO:A0A078C5M1	EnsemblPlants:CDX72197	ProteinID:CDX72197	ProteinID:CDX72197.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00156030001
InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N	InterPro:Hs1pro-1_C	PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795
SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI0004EC440F	SEG:seg	:	:

Description

BnaC08g26770D

Coordinates

chrLK031795:+:2959256..2960533

Molecular Weight (calculated)

48300.9 Da

IEP (calculated)

5.498

GRAVY (calculated)

-0.277

Length

425 amino acids

Sequence
(BLAST)

001: MADLDMERKM VSPKKLHVTI PEPFDLSVSS PISSSSSAAA YELYLRLPEL RNLLSSLGFP QWVTEPVLKP ALQALEITFR LILTVASDTR PYINRQEWTR
101: RLDSLVTSQI KIVASLCEDD DECVPVSNGW SSMSLLSEIA TCRTTESIGQ KILCTVENEM RWCKYTLGLG EPNLAGKPYL QYDVVCRPEE LQSLKNNPYA
201: DHIENQENQT LYTIHQILES WIHVSLNLLN RIESRIDEAK FEKASSDVYL LETIWNLLSE IEDLHILMDP EDFLKVKKQL KIKSTSQNHA FCFRSKGLVE
301: MAKMSRELRQ KVPAVLEVEV DPTGGPRLQE AAMKLYSSKT EYEKIHLLQG MQAVESASKR FFFGYQKLAA AMMGSAEANA NRTAASHHET CDSLTQVFME
401: PTYYPSLDAA KTFLGEFWSN LVSRH

Best Arabidopsis Sequence Match ( AT3G55840.1 )
(BLAST)

001: MADLDLQRKM VSPKLHVTIP EPCKLSSVSS PISSSSSAAC SAYELYLRLP ELRNLWSSLY FPHWISEPVL KPALQALEIT FRLILTVASD TRPYINRREW
101: IRRLDSLTTS QIKIVAAICG DEDNYEENVS AAPVSNGWSS LSLLSEIATC RTSESVGQKI LSTIENEMRW CKYTLGLGEP NLAGKPYLQY DAVCLPEELH
201: SLKNNPYADH IENQENQMLY TSHQILESWI YVSVNLLYRI ESRIEEGKFE KASSDVYLLE RIWKLLSEIE DLHILMDPED FLKVKKQLQI KSTFPNDAFC
301: FRSKGLVEMA KMSKELRQKV PAVLEVEVDP TGGPRLQEAA MKLYSRKTEY EKIHLLQGMQ AVESAAKRFF FGYQKLVAAM IGNAEANANR TVANHESYDS
401: LTQVFMEPPY YPSLDAAKTF LGEFWSQL

Arabidopsis Description

HSPRO1Nematode resistance protein-like HSPRO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY61]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.