CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
golgi 1
mitochondrion 2
vacuole 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92868
KRG96825
KRG97765
KRH01780
KRH02229
KRH12134
KRH14977
KRH31120
KRH33916
KRH37135
KRH46912
KRH50894
KRH52586
KRH61926
KRH68539
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	KRG92868	AT1G09020.1	17028154
AT2G40000.1	KRG96825	AT1G09020.1	17028154
AT2G40000.1	KRH02229	AT1G09020.1	17028154
AT2G40000.1	KRH12134	AT1G09020.1	17028154
AT2G40000.1	KRH33916	AT1G09020.1	17028154
AT2G40000.1	KRH37135	AT1G09020.1	17028154
AT2G40000.1	KRH50894	AT1G09020.1	17028154
AT2G40000.1	KRH68539	AT1G09020.1	17028154
AT3G55840.1	KRG92868	AT1G09020.1	17028154
AT3G55840.1	KRG96825	AT1G09020.1	17028154
AT3G55840.1	KRH02229	AT1G09020.1	17028154
AT3G55840.1	KRH12134	AT1G09020.1	17028154
AT3G55840.1	KRH33916	AT1G09020.1	17028154
AT3G55840.1	KRH37135	AT1G09020.1	17028154
AT3G55840.1	KRH50894	AT1G09020.1	17028154
AT3G55840.1	KRH68539	AT1G09020.1	17028154
AT3G55840.1	KRH52586	AT1G71230.1	21798944
AT3G55840.1	KRH61926	AT1G71230.1	21798944
AT3G55840.1	KRG97765	AT3G55840.1	21798944
AT3G55840.1	KRH14977	AT3G55840.1	21798944
AT3G55840.1	KRH31120	AT3G55840.1	21798944
AT3G55840.1	KRH73164	AT3G55840.1	21798944
AT3G55840.1	KRH01780	AT5G16080.1	21798944
AT3G55840.1	KRH46912	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31120	Soybean	nucleus	95.12	94.29
CDY04614	Canola	cytosol	11.31	62.2
CDX68585	Canola	cytosol	11.31	62.2
KRH73164	Soybean	cytosol	60.09	62.01
KRH14977	Soybean	plastid	62.75	60.73
CDY20507	Canola	cytosol	26.16	59.9
CDX72167	Canola	cytosol	10.86	59.76
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	62.08	58.82
CDY24933	Canola	cytosol	54.1	57.82
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	54.32	57.78
Bra017040.1-P	Field mustard	cytosol	53.44	57.24
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	53.44	56.97
CDY70017	Canola	cytosol	52.77	56.67
CDY07047	Canola	cytosol	52.77	56.53
CDY61713	Canola	cytosol	52.11	55.69
AT2G40000.1	Thale cress	cytosol	53.22	55.17
CDX74813	Canola	cytosol	51.22	55.13
Bra004994.1-P	Field mustard	cytosol	50.55	54.55
CDX72197	Canola	cytosol	50.78	53.88
CDY27261	Canola	cytosol	50.33	53.41
AT3G55840.1	Thale cress	cytosol, plastid	50.55	53.27
Bra007195.1-P	Field mustard	cytosol	49.89	52.94
GSMUA_Achr5P28920_001	Banana	cytosol	47.23	52.59
GSMUA_Achr10P...	Banana	nucleus	49.89	51.25
GSMUA_Achr11P...	Banana	plastid	51.22	48.84
HORVU3Hr1G111690.1	Barley	cytosol	14.19	47.41
KXG33721	Sorghum	plastid	47.67	45.84
HORVU3Hr1G084830.1	Barley	cytosol	47.23	45.61
TraesCS3A01G368800.1	Wheat	cytosol	47.23	45.61
Zm00001d042811_P001	Maize	cytosol	47.23	45.51
TraesCS3D01G361800.1	Wheat	cytosol	47.01	45.4
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	46.56	44.97
Os01t0855600-01	Rice	plasma membrane	47.23	44.94
Zm00001d012321_P001	Maize	plastid	46.56	44.3

Protein Annotations

KEGG:00380+1.13.11.11	Gene3D:1.20.58.480	EntrezGene:100802892	MapMan:35.1	EMBL:ACUP02010814	EnsemblPlantsGene:GLYMA_18G029300
GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2
InterPro:HSPRO1_N	InterPro:Hs1pro-1_C	UniProt:I1MZ42	EnsemblPlants:KRG97765	ProteinID:KRG97765	ProteinID:KRG97765.1
PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795	SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI00001500D6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:2221206..2223309

Molecular Weight (calculated)

51436.5 Da

IEP (calculated)

6.646

GRAVY (calculated)

-0.335

Length

451 amino acids

Sequence
(BLAST)

001: MVDLHWKSKM PSSKTPKLSL SDNKSLPSLQ LPFRTTDISP AAPSVCAAYD YYLRLPQLRK LWNSTDFPNW NNEPILKPIL QALEITFRFL SIVLSDPRPY
101: SNHREWTRRI ESLIMHQIEI IAILCEEEEQ NSDTRGTAPT ADLSSSNSSV SRSYSEASLL PRLATWYKSR DVAQRILLSV ECQMRRCSYT LGLGEPNLAG
201: KPSLLYDLVC KPNEIHALKT TPYDERVENH ENHAVHATHQ IAESWIHASR KVLERIADAV LSRTFLKAAE DCYAVERIWK LLAEVEDLHL MMDPDDFLRL
301: KNQLSVKSSS GETASFCFRS NELVELTKMC RDLRHKVPEI LEVEVDPKGG PRIQEAAMKL YVSKSEFEKV HLLQAMQAIE AAMKRFFYAY KQVLAVVMGS
401: SEANGNRVGL SCDSADSLTQ IFLEPTYFPS LDAAKTFLGY LWDNNDNNKW I

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.