Factsheet for VIT_13s0067g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_05s0020g01580.t01
VIT_13s0067g00260.t01
VIT_14s0006g03180.t01
VIT_14s0128g00890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	VIT_05s0020g01580.t01	AT1G09020.1	17028154
AT2G40000.1	VIT_14s0128g00890.t01	AT1G09020.1	17028154
AT3G55840.1	VIT_05s0020g01580.t01	AT1G09020.1	17028154
AT3G55840.1	VIT_14s0128g00890.t01	AT1G09020.1	17028154
AT3G55840.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT3G55840.1	VIT_13s0067g00260.t01	AT3G55840.1	21798944
AT3G55840.1	VIT_14s0006g03180.t01	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68585	Canola	cytosol	10.71	62.2
CDY04614	Canola	cytosol	10.71	62.2
KRG97765	Soybean	plastid	58.82	62.08
CDY20507	Canola	cytosol	25.63	61.93
CDY24933	Canola	cytosol	54.62	61.61
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	54.83	61.56
KRH31120	Soybean	nucleus	58.61	61.32
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	54.2	60.99
CDX72167	Canola	cytosol	10.5	60.98
Bra017040.1-P	Field mustard	cytosol	52.94	59.86
CDY07047	Canola	cytosol	52.94	59.86
AT3G55840.1	Thale cress	cytosol, plastid	53.57	59.58
AT2G40000.1	Thale cress	cytosol	54.41	59.54
CDY61713	Canola	cytosol	52.31	59.0
CDY70017	Canola	cytosol	51.47	58.33
CDX74813	Canola	cytosol	50.84	57.76
CDX72197	Canola	cytosol	51.47	57.65
CDY27261	Canola	cytosol	51.26	57.41
Bra004994.1-P	Field mustard	cytosol	50.21	57.18
Bra007195.1-P	Field mustard	cytosol	51.05	57.18
GSMUA_Achr5P28920_001	Banana	cytosol	47.9	56.3
HORVU3Hr1G084830.1	Barley	cytosol	52.94	53.96
GSMUA_Achr10P...	Banana	nucleus	49.58	53.76
KRH73164	Soybean	cytosol	49.16	53.55
TraesCS3D01G361800.1	Wheat	cytosol	52.52	53.53
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	52.31	53.32
TraesCS3A01G368800.1	Wheat	cytosol	52.1	53.1
KXG33721	Sorghum	plastid	52.31	53.09
Zm00001d042811_P001	Maize	cytosol	51.68	52.56
GSMUA_Achr11P...	Banana	plastid	51.89	52.22
Os01t0855600-01	Rice	plasma membrane	51.47	51.69
Zm00001d012321_P001	Maize	plastid	50.84	51.05
KRH14977	Soybean	plastid	49.58	50.64
HORVU3Hr1G111690.1	Barley	cytosol	13.03	45.93

Protein Annotations

KEGG:00380+1.13.11.11	EntrezGene:100255226	wikigene:100255226	MapMan:35.1	EMBL:AM484831	ProteinID:CAN79750
ProteinID:CAN79750.1	ProteinID:CCB49884	ProteinID:CCB49884.1	UniProt:F6HC04	EMBL:FN595514	GO:GO:0003674
GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N
InterPro:Hs1pro-1_C	EntrezGene:LOC100255226	wikigene:LOC100255226	PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795
SUPFAM:SSF140959	TIGR:TC58325	TIGR:TC61394	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI000198454A	ArrayExpress:VIT_13s0067g00260
EnsemblPlantsGene:VIT_13s0067g00260	EnsemblPlants:VIT_13s0067g00260.t01	unigene:Vvi.9593	RefSeq:XP_002268520	RefSeq:XP_002268520.1	SEG:seg

Description

No Description!

Coordinates

chr13:-:185717..187486

Molecular Weight (calculated)

54300.0 Da

IEP (calculated)

6.633

GRAVY (calculated)

-0.452

Length

476 amino acids

Sequence
(BLAST)

001: MVDLDCTAKM VSPDMPKKSP KFSNKLQVSI PSAFRAGDLS SAPSPECSAY EYYLRLSELK KLWDSREFPN WKNESLIRPA LQALELTFRF VSTVLSDPRP
101: YANRREWKRR LESLTTNQIQ LVAILCEEEE EEGEMRGTAP ISDLSLSNGV LARDGSCAEV WKVPGATPVV SRTSEASLLP RLATWPKSED IAQKIMYSIE
201: CEMRGCPYTL GLGEPNLVGK PNLEYDLVCK PSELHSLKRN PYDHVENYEN QTLYTTSQIL ESWIYTAQQL LKRIAERIEE RDLEKASSDC WLLERIWKLL
301: ADIEDLHLLM DPDDFLRLKK QLSIKSSPES EPFCFRSRGL VEITKSSKDL KHKVPYLLGV EVDPKGGPRV QEAVMKLYRE KVGSEKIHLL QALQAIESAL
401: KRFFYAYKQV MVMVMGSSEA RVSRPLLSSD STDSLSQIFM EPTYYPSLDA AKTFLGDFWD HQHGTYASNR SGRARK

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.