Factsheet for GSMUA_Achr5P28920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr5P28920_001
GSMUA_Achr6P16980_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT2G40000.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT3G55840.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT3G55840.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT3G55840.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT3G55840.1	GSMUA_Achr10P...	AT3G55840.1	21798944
AT3G55840.1	GSMUA_Achr11P...	AT3G55840.1	21798944
AT3G55840.1	GSMUA_Achr5P28920_001	AT3G55840.1	21798944
AT3G55840.1	GSMUA_Achr10P...	AT5G16080.1	21798944
AT3G55840.1	GSMUA_Achr6P16980_001	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	81.73	69.98
GSMUA_Achr10P...	Banana	nucleus	74.07	68.34
HORVU3Hr1G111690.1	Barley	cytosol	18.02	54.07
KXG33721	Sorghum	plastid	60.99	52.67
Zm00001d042811_P001	Maize	cytosol	60.0	51.92
Os01t0855600-01	Rice	plasma membrane	60.49	51.69
HORVU3Hr1G084830.1	Barley	cytosol	59.01	51.18
Zm00001d012321_P001	Maize	plastid	59.75	51.05
TraesCS3D01G361800.1	Wheat	cytosol	58.77	50.96
TraesCS3A01G368800.1	Wheat	cytosol	58.77	50.96
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	57.78	50.11
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	56.3	47.9
KRG97765	Soybean	plastid	52.59	47.23
CDY24933	Canola	cytosol	48.64	46.68
KRH31120	Soybean	nucleus	51.85	46.15
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	48.15	45.99
CDY61713	Canola	cytosol	47.9	45.97
Bra017040.1-P	Field mustard	cytosol	47.65	45.84
CDY07047	Canola	cytosol	47.41	45.61
CDY70017	Canola	cytosol	46.91	45.24
CDY20507	Canola	cytosol	21.98	45.18
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	47.16	45.15
Bra004994.1-P	Field mustard	cytosol	46.17	44.74
CDX74813	Canola	cytosol	45.68	44.15
AT2G40000.1	Thale cress	cytosol	47.16	43.91
AT3G55840.1	Thale cress	cytosol, plastid	45.68	43.22
CDY27261	Canola	cytosol	44.94	42.82
CDX72197	Canola	cytosol	44.94	42.82
Bra007195.1-P	Field mustard	cytosol	44.94	42.82
KRH73164	Soybean	cytosol	43.46	40.27
KRH14977	Soybean	plastid	45.93	39.91
CDY04614	Canola	cytosol	6.67	32.93
CDX72167	Canola	cytosol	6.67	32.93
CDX68585	Canola	cytosol	6.67	32.93

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G28920_001	EnsemblPlants:GSMUA_Achr5P28920_001	EnsemblPlants:GSMUA_Achr5T28920_001	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N
InterPro:Hs1pro-1_C	UniProt:M0T2L6	PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795	SUPFAM:SSF140959
InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI000296D51F	SEG:seg	:	:	:

Description

hs1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G28920_001]

Coordinates

chr5:+:28874105..28876087

Molecular Weight (calculated)

45369.0 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.309

Length

405 amino acids

Sequence
(BLAST)

001: MAASEISPAP SDAKSKVWST AAALRGHDAS AIAAYEHYLR LPELAKLWSS NDFPRWTNES ILKPALQGLE ITFRFVSLAL SDPRPYANHR EWKRRLESLA
101: ARQVEIIATL CEEEARAGGG APIADLSSRT SEASLLPRLA TWEKSEDVAS KILFQIESQM HRCQFTLGLG EPNLTGKPTL EYDLVVRPSD LHALKRSPGS
201: SKDLHNHEDQ ALCTIQQILE SWLFAARELL ARVDQRMDDK DWAQAANDCW LLERVWKLLS DVEDLHLLMD PDDFLRLKSQ LAIKATSGSE AFCFRSAALL
301: QVTNSCKDLK RRVPWILGVE ADPNGGPRVQ DAAMRLFHSR RRGEGDNPGK IDLLQALQAV EVALKTFFFA YRHLVATVMG SLEASGNRAI TNFEISARHN
401: SRIYK

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.