Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 5
- mitochondrion 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 56.17 | 18.76 |
| Bra030752.1-P | Field mustard | plastid | 43.21 | 18.47 |
| GSMUA_Achr8P06740_001 | Banana | plastid | 51.85 | 17.04 |
| Os03t0856400-01 | Rice | plasma membrane | 50.0 | 16.43 |
| GSMUA_Achr3P23950_001 | Banana | cytosol | 48.77 | 16.16 |
| GSMUA_Achr2P01600_001 | Banana | cytosol | 48.77 | 16.02 |
| KRH50894 | Soybean | nucleus | 47.53 | 15.98 |
| Zm00001d012817_P002 | Maize | cytosol | 48.77 | 15.93 |
| EER93064 | Sorghum | cytosol | 48.77 | 15.93 |
| AT1G09020.1 | Thale cress | cytosol, plastid | 47.53 | 15.81 |
| Bra018586.1-P | Field mustard | plastid | 42.59 | 15.72 |
| KRH02229 | Soybean | nucleus | 46.3 | 15.56 |
| KRH12134 | Soybean | nucleus | 46.91 | 15.48 |
| KRH37135 | Soybean | cytosol | 46.91 | 15.45 |
| CDY31116 | Canola | plastid | 45.68 | 15.35 |
| CDY32146 | Canola | plastid | 45.68 | 15.35 |
| TraesCS4A01G320000.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 46.91 | 15.29 |
| TraesCS5D01G565200.3 | Wheat | cytosol, nucleus, peroxisome, plastid | 46.3 | 15.09 |
| VIT_05s0020g01580.t01 | Wine grape | cytosol | 45.68 | 15.07 |
| Solyc01g067590.2.1 | Tomato | cytosol | 44.44 | 14.94 |
| HORVU5Hr1G124410.12 | Barley | plastid | 45.68 | 14.89 |
| CDX95016 | Canola | plastid | 43.83 | 14.7 |
| CDX93522 | Canola | plastid | 43.83 | 14.67 |
| CDY06344 | Canola | mitochondrion, plastid | 43.21 | 14.52 |
| CDY22651 | Canola | mitochondrion, plastid | 43.21 | 14.52 |
| TraesCS5B01G559100.1 | Wheat | cytosol, plastid | 44.44 | 14.49 |
| Bra031654.1-P | Field mustard | plastid | 43.21 | 14.34 |
| Zm00001d034896_P003 | Maize | golgi, plasma membrane | 37.65 | 11.3 |
| PGSC0003DMT400027641 | Potato | cytosol | 12.35 | 4.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 1.23 | 4.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 2.47 | 2.55 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 2.47 | 2.05 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP14720_001 | EnsemblPlants:GSMUA_AchrUn_randomT14720_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG14720_001 | Gene3D:2.60.40.10 | InterPro:AMPK1_CBM | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:Ig_E-set | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF92 | PFAM:PF16561 | SEG:seg |
| SUPFAM:SSF81296 | UniParc:UPI0002964450 | UniProt:M0U981 | MapMan:35.1 | : | : |
Description
CBS domain containing membrane protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14720_001]
Coordinates
chrchrUn_random:+:69413743..69420366
Molecular Weight (calculated)
18454.0 Da
IEP (calculated)
7.177
GRAVY (calculated)
-0.258
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSRTDCTH DTAGISGQVL IATKFVWPYG GRTVSLIGSF TGWTDRYPMF PAEDCPNIFQ AVYSLTPGIH QYKFFVDGEW RHDDQQPHVV GNYGIVNTLI
101: LPQESNPILT ALGLEKPSNR INMDVDNWNV RHVVSLHVCY CIHIQGFEFK DKGKKKGREF IM
101: LPQESNPILT ALGLEKPSNR INMDVDNWNV RHVVSLHVCY CIHIQGFEFK DKGKKKGREF IM
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
Arabidopsis Description
SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.