Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 8.87 | 86.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.68 | 70.06 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 27.22 | 67.69 |
| GSMUA_Achr2P01600_001 | Banana | cytosol | 68.45 | 67.34 |
| GSMUA_Achr8P06740_001 | Banana | plastid | 67.42 | 66.33 |
| GSMUA_Achr3P23950_001 | Banana | cytosol | 66.6 | 66.05 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.76 | 56.17 |
Protein Annotations
| MapMan:18.4.5.1.4 | Gene3D:2.60.40.10 | MapMan:27.3.1.4 | Gene3D:3.10.580.10 | InterPro:AMPK1_CBM | InterPro:CBS_dom |
| EnsemblPlantsGene:GSMUA_Achr11G20430_001 | EnsemblPlants:GSMUA_Achr11P20430_001 | EnsemblPlants:GSMUA_Achr11T20430_001 | InterPro:IPR000644 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:Ig_E-set | UniProt:M0RTX3 | PFAM:PF00571 | PFAM:PF16561 | PFscan:PS51371 | PANTHER:PTHR13780 |
| PANTHER:PTHR13780:SF92 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81296 | UniParc:UPI00029533DC | SEG:seg |
Description
Putative 5'-AMP-activated protein kinase subunit gamma-1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20430_001]
Coordinates
chr11:-:21414763..21427424
Molecular Weight (calculated)
54557.4 Da
IEP (calculated)
6.717
GRAVY (calculated)
-0.203
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSGTDRTQ VTAAVSCGVL IPTRFVWPYG GRRVYLLGSF TRWTEHLPMT RVEGCPSVFQ AICRLTPGVH QYKFFVDGEW RHDERQPHMV GNYGIVNTLI
101: VTQEPSMQTI LSPETPNNRM NMDVDHENFR HVETTLTTVE ADIGDFRDQI YEFLSTHTAY DLLPDSGKVI TLDVNLPVKQ AFHILYEQEI PVAPLLDTCK
201: GEFVGVLSPL DFILILKELS SHGSNLTEEE LETHTISAWK KAKQQRSWPL VMHERKSKDH LIHVGPYDSL KDVALNIVQN QVATVPIIHS PSQEESFPHL
301: LHLASLSGIL KCICRHFRHS SSSLPVLQQA ICTTPLGTWV PRNAESNKKH LTMLRSNESL SSALALLLQA QVSSVPIVDD HDRLLDAYSR SDITSLAKDK
401: AYAQIHLDEV SIYQALQLRQ DANPHQGSHN GQRCHMCLRS DSLQKVMEQL ANPGVRRLFV VEAGSNRVEG IISLGDVFKF LLGLP
101: VTQEPSMQTI LSPETPNNRM NMDVDHENFR HVETTLTTVE ADIGDFRDQI YEFLSTHTAY DLLPDSGKVI TLDVNLPVKQ AFHILYEQEI PVAPLLDTCK
201: GEFVGVLSPL DFILILKELS SHGSNLTEEE LETHTISAWK KAKQQRSWPL VMHERKSKDH LIHVGPYDSL KDVALNIVQN QVATVPIIHS PSQEESFPHL
301: LHLASLSGIL KCICRHFRHS SSSLPVLQQA ICTTPLGTWV PRNAESNKKH LTMLRSNESL SSALALLLQA QVSSVPIVDD HDRLLDAYSR SDITSLAKDK
401: AYAQIHLDEV SIYQALQLRQ DANPHQGSHN GQRCHMCLRS DSLQKVMEQL ANPGVRRLFV VEAGSNRVEG IISLGDVFKF LLGLP
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
Arabidopsis Description
SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.