Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33916 | Soybean | cytosol | 44.62 | 36.71 |
| GSMUA_Achr11P... | Banana | cytosol | 67.69 | 27.22 |
| Bra018586.1-P | Field mustard | plastid | 60.51 | 26.88 |
| VIT_14s0128g00890.t01 | Wine grape | cytosol | 65.13 | 26.35 |
| CDY32146 | Canola | plastid | 60.51 | 24.48 |
| CDY31116 | Canola | plastid | 60.51 | 24.48 |
| AT1G09020.1 | Thale cress | cytosol, plastid | 61.03 | 24.44 |
| CDX95016 | Canola | plastid | 60.51 | 24.43 |
| CDX93522 | Canola | plastid | 60.51 | 24.38 |
| GSMUA_Achr2P01600_001 | Banana | cytosol | 61.03 | 24.14 |
| CDY22651 | Canola | mitochondrion, plastid | 59.49 | 24.07 |
| CDY06344 | Canola | mitochondrion, plastid | 59.49 | 24.07 |
| KRG92868 | Soybean | cytosol, plastid | 58.97 | 23.66 |
| PGSC0003DMT400063659 | Potato | cytosol, plastid | 58.46 | 23.6 |
| Solyc01g099280.2.1 | Tomato | plastid | 58.46 | 23.6 |
| Bra031654.1-P | Field mustard | plastid | 58.97 | 23.57 |
| KRG96825 | Soybean | cytosol | 55.9 | 22.8 |
| GSMUA_Achr8P06740_001 | Banana | plastid | 57.44 | 22.72 |
| GSMUA_Achr3P23950_001 | Banana | cytosol | 56.92 | 22.7 |
| KRH68539 | Soybean | cytosol | 54.87 | 22.38 |
| Bra030752.1-P | Field mustard | plastid | 37.95 | 19.53 |
| GSMUA_AchrUn_... | Banana | cytosol | 3.08 | 12.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 3.08 | 3.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 2.05 | 2.47 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP14740_001 | EnsemblPlants:GSMUA_AchrUn_randomT14740_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG14740_001 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:IPR000644 |
| PANTHER:PTHR13780 | PANTHER:PTHR13780:SF92 | PFAM:PF00571 | PFscan:PS51371 | SEG:seg | SUPFAM:SSF54631 |
| UniParc:UPI000294DC10 | UniProt:M0U983 | MapMan:18.4.5.1.4 | MapMan:27.3.1.4 | : | : |
Description
CBS domain containing membrane protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14740_001]
Coordinates
chrchrUn_random:+:69437310..69439283
Molecular Weight (calculated)
21929.8 Da
IEP (calculated)
7.188
GRAVY (calculated)
0.257
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFLIRHAEP YDSLKDVALK ILQNQVATVP IISSRGESFP HLLYLASLSE IMKCICRHFR HSSVSLPILQ QAICTIPVGT WIQRIGESNG KHLAMLRPNE
101: SLSSALALLV QAQVSSIPII DDHDCLLDAY SRSDITSLAK DNAYARIHLD DMRIYQNLFL FALSSKFCCH SILFLDTSMG YDIIKFCYAL NNPTL
101: SLSSALALLV QAQVSSIPII DDHDCLLDAY SRSDITSLAK DNAYARIHLD DMRIYQNLFL FALSSKFCCH SILFLDTSMG YDIIKFCYAL NNPTL
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
Arabidopsis Description
SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.