CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97765
KRH01228
KRH14977
KRH18445
KRH31120
KRH44934
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	KRG97765	AT2G40000.1	17028154
AT1G09020.1	KRH14977	AT2G40000.1	17028154
AT1G09020.1	KRH31120	AT2G40000.1	17028154
AT1G09020.1	KRH73164	AT2G40000.1	17028154
AT1G09020.1	KRH01228	AT3G29160.1	17028154
AT1G09020.1	KRH18445	AT3G29160.1	17028154
AT1G09020.1	KRH44934	AT3G29160.1	17028154
AT1G09020.1	KRG97765	AT3G55840.1	17028154
AT1G09020.1	KRH14977	AT3G55840.1	17028154
AT1G09020.1	KRH31120	AT3G55840.1	17028154
AT1G09020.1	KRH73164	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68539	Soybean	cytosol	94.14	94.14
KRG92868	Soybean	cytosol, plastid	74.27	73.05
VIT_14s0128g00890.t01	Wine grape	cytosol	72.59	71.99
AT1G09020.1	Thale cress	cytosol, plastid	71.55	70.23
PGSC0003DMT400063659	Potato	cytosol, plastid	70.71	69.98
Solyc01g099280.2.1	Tomato	plastid	70.5	69.77
Bra018586.1-P	Field mustard	plastid	64.02	69.7
KRH33916	Soybean	cytosol	34.31	69.2
CDX95016	Canola	plastid	69.87	69.15
Bra030752.1-P	Field mustard	plastid	54.81	69.13
CDY22651	Canola	mitochondrion, plastid	69.46	68.88
CDX93522	Canola	plastid	69.67	68.8
CDY31116	Canola	plastid	69.04	68.46
CDY06344	Canola	mitochondrion, plastid	69.04	68.46
CDY32146	Canola	plastid	68.62	68.05
Bra031654.1-P	Field mustard	plastid	67.99	66.6
KRH37135	Soybean	cytosol	66.11	64.23
KRH12134	Soybean	nucleus	65.9	64.15
KRH50894	Soybean	nucleus	63.81	63.28
KRH02229	Soybean	nucleus	63.39	62.86
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	22.8	55.9

Protein Annotations

EntrezGene:100778117	MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	EMBL:ACUP02012166
InterPro:AMPK1_CBM	InterPro:CBS_dom	EnsemblPlantsGene:GLYMA_19G234600	UniProt:I1NBY9	InterPro:IPR000644	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRG96825	ProteinID:KRG96825	ProteinID:KRG96825.1	PFAM:PF00571
PFAM:PF16561	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116	SUPFAM:SSF54631
SUPFAM:SSF81296	UniParc:UPI000233E8E4	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:48442861..48450365

Molecular Weight (calculated)

52642.7 Da

IEP (calculated)

7.114

GRAVY (calculated)

0.044

Length

478 amino acids

Sequence
(BLAST)

001: MFASVVDGAC EGSGVSGPIL IPRRFVWPYG GTTVFLTGSF TRWSNHIAMS PMEGCPAVFQ VVCNLMPGFH QYKFNVDGEW RHDDQQPFVN GSCGVVNTIY
101: IVREPDILPS ILNTETPGRS HMEVDNMEAN PRMPVSDLEV SRHRISVFLS THTAYNLLPE SGKVIALDIN LPVKQAFHVL YEQGVSMAPL WDFFKSQFVG
201: VLSAMDFILI LKELGNHGSN LTQEQLETHT IAAWKEGKFQ QFRTLDSNGG SYPWRFVHAG PHECLKDVAL KVLQNKVSTV PIIHSSSEDG SYPQLLHLAS
301: LSGILKGICR HFKHSLSSLP ILQLPVASIP LGTWMPRVGE PNGRPLAMLM PSASLGAALS MFVQAKVSSI PIVDANDSLL DIYSRSDITA LAKDKAYARI
401: SLDEISIHQA LLLGQDATSP SGIYNGQRCH MCLRSESLYK VMERLANPGV RRLVVVEAGS KRVEGIISLS DVFRFLLG

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.