CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68585
CDX72167
CDX72197
CDX74813
CDX85250
CDX86386
CDY04058
CDY04614
CDY07047
CDY20507
CDY24933
CDY27261
CDY44405
CDY60990
CDY61713
CDY70017

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	CDX68585	AT2G40000.1	17028154
AT1G09020.1	CDX72167	AT2G40000.1	17028154
AT1G09020.1	CDX74813	AT2G40000.1	17028154
AT1G09020.1	CDY04614	AT2G40000.1	17028154
AT1G09020.1	CDY07047	AT2G40000.1	17028154
AT1G09020.1	CDY20507	AT2G40000.1	17028154
AT1G09020.1	CDY24933	AT2G40000.1	17028154
AT1G09020.1	CDY60990	AT2G40000.1	17028154
AT1G09020.1	CDY61713	AT2G40000.1	17028154
AT1G09020.1	CDY70017	AT2G40000.1	17028154
AT1G09020.1	CDX85250	AT3G29160.1	17028154
AT1G09020.1	CDX86386	AT3G29160.1	17028154
AT1G09020.1	CDY04058	AT3G29160.1	17028154
AT1G09020.1	CDY44405	AT3G29160.1	17028154
AT1G09020.1	CDX72197	AT3G55840.1	17028154
AT1G09020.1	CDY27261	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93522	Canola	plastid	98.55	98.35
CDY06344	Canola	mitochondrion, plastid	93.17	93.36
CDY22651	Canola	mitochondrion, plastid	92.75	92.95
CDY31116	Canola	plastid	92.75	92.95
AT1G09020.1	Thale cress	cytosol, plastid	93.17	92.4
CDY32146	Canola	plastid	91.72	91.91
VIT_14s0128g00890.t01	Wine grape	cytosol	77.23	77.39
Solyc01g099280.2.1	Tomato	plastid	71.64	71.64
KRG96825	Soybean	cytosol	69.15	69.87
KRH68539	Soybean	cytosol	67.91	68.62
KRH12134	Soybean	nucleus	69.15	68.02
KRH37135	Soybean	cytosol	68.53	67.28
VIT_05s0020g01580.t01	Wine grape	cytosol	67.49	66.4
KRH50894	Soybean	nucleus	65.84	65.98
KRH02229	Soybean	nucleus	65.22	65.35
Solyc01g067590.2.1	Tomato	cytosol	65.01	65.15
KRG92868	Soybean	cytosol, plastid	64.8	64.4
KRH33916	Soybean	cytosol	31.47	64.14
TraesCS5B01G559100.1	Wheat	cytosol, plastid	65.01	63.18
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	64.8	62.98
Zm00001d012817_P002	Maize	cytosol	64.6	62.9
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	64.6	62.78
EER93064	Sorghum	cytosol	64.39	62.7
HORVU5Hr1G124410.12	Barley	plastid	64.39	62.58
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	24.43	60.51
Zm00001d034896_P003	Maize	golgi, plasma membrane	60.46	54.07
GSMUA_AchrUn_...	Banana	cytosol	14.7	43.83
PGSC0003DMT400027640	Potato	cytosol	28.57	35.75
Os04t0401300-01	Rice	mitochondrion	1.45	5.6

Protein Annotations

EnsemblPlants:CDX95016	EnsemblPlantsGene:GSBRNA2T00100531001	Gene3D:2.60.40.10	Gene3D:3.10.580.10	InterPro:AMPK1_CBM	InterPro:CBS_dom
InterPro:IPR000644	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92
PFAM:PF00571	PFAM:PF16561	PFscan:PS51371	ProteinID:CDX95016	ProteinID:CDX95016.1	SMART:SM00116
SUPFAM:SSF54631	SUPFAM:SSF81296	UniParc:UPI0004EAB2F9	MapMan:18.4.5.1.4	MapMan:27.3.1.4	:

Description

BnaC05g06550D

Coordinates

chrLK031886:+:696379..701132

Molecular Weight (calculated)

53099.8 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.064

Length

483 amino acids

Sequence
(BLAST)

001: MFGSTVDTSR GNSAASGQQL LTPTRFVWPY GGRRVFLSGS FTRWTEHVPM SPLEGCPTVF QVICNLTPGY HQYKFYVDGE WRHDEHQPFV NANGGVMNTI
101: FITGPDMPPA AFSPSNMDVD DFSQRVVDPS QDSIPRMSAA DLEMSRHRIS ALLSNRTAYE LLPESGKVIA LDVNLPVKQA FHILYEQGIP LAPLWDFGKG
201: QFVGVLGPLD FILILRELGT HGSNLTEEEL ETHTVAAWKE GKAHISRQYD GIGRPYPRPL VQVGPYDNLK DVALKILQNK VAAVPVIYSS LQDGSYPQLL
301: HLASLSGILK CICRYFRHSS SSLPILQQPI CSIPLGTWVP RIGESSSKPL ATLRPHASLG SALSLLVQAG VSSIPVVDDN DSLIDIYSRS DITALAKDKA
401: YAQIHLDDMT VHQALQLGQD ASPPYGIFNG QRCHMCLRSD SLGKVIERLA NPGVRRLVIV EAGSKRVEGI ISLSDVFRFL LGL

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.