CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01406
EES19859
KXG33721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	KXG33721	AT2G40000.1	17028154
AT1G09020.1	EES01406	AT3G29160.1	17028154
AT1G09020.1	EES19859	AT3G29160.1	17028154
AT1G09020.1	KXG33721	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012817_P002	Maize	cytosol	95.77	95.77
Os03t0856400-01	Rice	plasma membrane	86.29	86.82
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	85.69	85.51
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	85.69	85.51
TraesCS5B01G559100.1	Wheat	cytosol, plastid	85.28	85.11
HORVU5Hr1G124410.12	Barley	plastid	84.88	84.71
Zm00001d034896_P003	Maize	golgi, plasma membrane	89.31	82.04
KRH50894	Soybean	nucleus	64.92	66.81
KRH02229	Soybean	nucleus	64.92	66.81
AT1G09020.1	Thale cress	cytosol, plastid	64.52	65.71
KRH37135	Soybean	cytosol	64.72	65.24
KRH12134	Soybean	nucleus	64.11	64.77
CDY31116	Canola	plastid	62.7	64.52
Bra018586.1-P	Field mustard	plastid	57.06	64.46
CDX95016	Canola	plastid	62.7	64.39
VIT_05s0020g01580.t01	Wine grape	cytosol	63.71	64.36
Bra030752.1-P	Field mustard	plastid	48.79	63.85
CDX93522	Canola	plastid	62.3	63.84
CDY32146	Canola	plastid	61.9	63.69
CDY22651	Canola	mitochondrion, plastid	61.9	63.69
CDY06344	Canola	mitochondrion, plastid	61.9	63.69
Solyc01g067590.2.1	Tomato	cytosol	60.28	62.03
Bra031654.1-P	Field mustard	plastid	60.89	61.89
PGSC0003DMT400027641	Potato	cytosol	42.34	52.24
GSMUA_AchrUn_...	Banana	cytosol	15.93	48.77
KXG26174	Sorghum	mitochondrion	26.21	28.76

Protein Annotations

MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	InterPro:AMPK1_CBM	UniProt:C5WRX9
InterPro:CBS_dom	EnsemblPlants:EER93064	ProteinID:EER93064	ProteinID:EER93064.1	InterPro:IPR000644	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00571	PFAM:PF16561	PFscan:PS51371	PANTHER:PTHR13780
PANTHER:PTHR13780:SF92	SMART:SM00116	EnsemblPlantsGene:SORBI_3001G005600	SUPFAM:SSF54631	SUPFAM:SSF81296	unigene:Sbi.3650
UniParc:UPI0001A827B9	RefSeq:XP_002466066.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:526364..532987

Molecular Weight (calculated)

54919.7 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.115

Length

496 amino acids

Sequence
(BLAST)

001: MFSHGADSAH DAGAVGVSTG GATVPTRFVW PYGGKRVFVS GSFTRWSEHL PMSPVEGCPT VFQAICSLSP GIHEYKFFVD GEWRHDERQP TISGEFGIVN
101: TLYLTREFNQ LNALLSPSTP GSRMNMDVDN ENFQRTVTLS DGTVPEGTPR VSEAAIQISR CRVSEYLNLH TCYDLLPDSG KVIALDINLP VKQSFHILHE
201: QGIPVAPLWD SFRGQFVGLL SPLDFILILR ELETHGSNLT EEQLETHTIS AWKEAKRQTY GRNDGQWRPH QHLVHATPYE SLRDIAVKLL QNGISTVPVI
301: YSSSSDGSFP QLLHLASLSG ILKCICRYFK NSTCNLPILN QPVCSIPLGS WVPKIGDPNS RPLAMLRPNA SLSSALNMLV QAGVSSVPIV DENDALLDTY
401: SRSDITALAK DKVYTHVRLD EMTIHQALQL GQDANTPFGF FNGQRCQMCL RSDPLLKVME RLANPGVRRV FIVEAGSKRV EGIISLSDIF KFLLSL

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.