Factsheet for TraesCS4A01G320000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1
TraesCS1B01G364800.1
TraesCS1D01G353300.1
TraesCS3A01G282800.1
TraesCS3A01G368800.1
TraesCS3B01G316500.1
TraesCS3B01G400800.1
TraesCS3D01G282800.1
TraesCS3D01G361800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	TraesCS3A01G368800.1	AT2G40000.1	17028154
AT1G09020.1	TraesCS3B01G400800.1	AT2G40000.1	17028154
AT1G09020.1	TraesCS3D01G361800.1	AT2G40000.1	17028154
AT1G09020.1	TraesCS1A01G350500.1	AT3G29160.1	17028154
AT1G09020.1	TraesCS1B01G364800.1	AT3G29160.1	17028154
AT1G09020.1	TraesCS1D01G353300.1	AT3G29160.1	17028154
AT1G09020.1	TraesCS3A01G282800.1	AT3G29160.1	17028154
AT1G09020.1	TraesCS3B01G316500.1	AT3G29160.1	17028154
AT1G09020.1	TraesCS3D01G282800.1	AT3G29160.1	17028154
AT1G09020.1	TraesCS3A01G368800.1	AT3G55840.1	17028154
AT1G09020.1	TraesCS3B01G400800.1	AT3G55840.1	17028154
AT1G09020.1	TraesCS3D01G361800.1	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	98.99	98.99
TraesCS5B01G559100.1	Wheat	cytosol, plastid	98.19	98.19
HORVU5Hr1G124410.12	Barley	plastid	97.18	97.18
Os03t0856400-01	Rice	plasma membrane	85.31	86.0
EER93064	Sorghum	cytosol	85.51	85.69
Zm00001d012817_P002	Maize	cytosol	84.91	85.08
Zm00001d034896_P003	Maize	golgi, plasma membrane	79.07	72.78
KRH02229	Soybean	nucleus	64.59	66.6
KRH50894	Soybean	nucleus	64.59	66.6
KRH37135	Soybean	cytosol	65.79	66.46
KRH12134	Soybean	nucleus	65.39	66.19
Bra018586.1-P	Field mustard	plastid	57.55	65.15
CDY31116	Canola	plastid	63.18	65.15
AT1G09020.1	Thale cress	cytosol, plastid	63.78	65.09
CDY32146	Canola	plastid	62.98	64.94
CDX95016	Canola	plastid	62.98	64.8
CDY06344	Canola	mitochondrion, plastid	62.78	64.73
Bra030752.1-P	Field mustard	plastid	49.3	64.64
CDY22651	Canola	mitochondrion, plastid	62.58	64.52
CDX93522	Canola	plastid	62.58	64.26
VIT_05s0020g01580.t01	Wine grape	cytosol	63.38	64.15
Bra031654.1-P	Field mustard	plastid	61.77	62.91
Solyc01g067590.2.1	Tomato	cytosol	60.36	62.24
PGSC0003DMT400027641	Potato	cytosol	43.06	53.23
GSMUA_AchrUn_...	Banana	cytosol	15.29	46.91
TraesCS2A01G289200.2	Wheat	mitochondrion	27.16	29.61

Protein Annotations

MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	InterPro:AMPK1_CBM	InterPro:CBS_dom
InterPro:IPR000644	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00571	PFAM:PF16561
PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81296
EnsemblPlantsGene:TraesCS4A01G320000	EnsemblPlants:TraesCS4A01G320000.1	TIGR:cd02859	TIGR:cd04618	TIGR:cd04641	SEG:seg

Description

No Description!

Coordinates

chr4A:+:608828643..608834674

Molecular Weight (calculated)

54403.2 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.109

Length

497 amino acids

Sequence
(BLAST)

001: MFSHGADPAH DASAAGGGVG VSAGGPLVHT RFVWPHGGKR VFLSGSFTRW SEHLPMSPVE GCPTVFQAIC SLPPGIYQYK FNVDGQWRHD EGQPTITGEY
101: GVVNTLYLTR EFDHINTVLS PTTPGSRMDV DNDSFQRMGS LLDGALQEGS PRISEAAIQI SRCRVAEYLN AHTGHDLLPD SGKVIALDIN LPVKQSFHIL
201: HEQGIPVAPL WDSFRGQFVG LLSPLDFILI LRELETHGSN LTEEQLETHT ISAWKEAKRQ TYGRNDGQLR SNQHLVHATP YESLRGIAMK ILETGISTVP
301: IIYSSSSDGS FPQLLHLASL SGILKCICRY FKNSTGSLPI LNQPVCSIPL GTWVPKIGEP NGHPLAMLRP NTSLSSALNL LVQAGVSSIP IVDDNDSLID
401: TYSRSDITAL AKDKVYTHIR LDEMTIHQAL QLGQDANSPF GLFNGQRCQM CLRSDPLLKV MERLANPGVR RVFIVEAGSK RVEGVISLSD IFKLLLS

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.