CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97765
KRH01228
KRH14977
KRH18445
KRH31120
KRH44934
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	KRG97765	AT2G40000.1	17028154
AT1G09020.1	KRH14977	AT2G40000.1	17028154
AT1G09020.1	KRH31120	AT2G40000.1	17028154
AT1G09020.1	KRH73164	AT2G40000.1	17028154
AT1G09020.1	KRH01228	AT3G29160.1	17028154
AT1G09020.1	KRH18445	AT3G29160.1	17028154
AT1G09020.1	KRH44934	AT3G29160.1	17028154
AT1G09020.1	KRG97765	AT3G55840.1	17028154
AT1G09020.1	KRH14977	AT3G55840.1	17028154
AT1G09020.1	KRH31120	AT3G55840.1	17028154
AT1G09020.1	KRH73164	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02229	Soybean	nucleus	96.89	96.89
KRH37135	Soybean	cytosol	84.65	82.93
KRH12134	Soybean	nucleus	83.61	82.08
VIT_05s0020g01580.t01	Wine grape	cytosol	73.44	72.1
Bra030752.1-P	Field mustard	plastid	53.94	68.6
CDY32146	Canola	plastid	68.05	68.05
Bra018586.1-P	Field mustard	plastid	61.83	67.88
CDY31116	Canola	plastid	67.84	67.84
AT1G09020.1	Thale cress	cytosol, plastid	68.46	67.76
Solyc01g067590.2.1	Tomato	cytosol	67.22	67.22
CDY06344	Canola	mitochondrion, plastid	65.98	65.98
CDX93522	Canola	plastid	66.18	65.91
CDX95016	Canola	plastid	65.98	65.84
CDY22651	Canola	mitochondrion, plastid	65.77	65.77
Os03t0856400-01	Rice	plasma membrane	66.81	65.31
EER93064	Sorghum	cytosol	66.81	64.92
Zm00001d012817_P002	Maize	cytosol	66.6	64.72
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	66.6	64.59
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	66.6	64.59
HORVU5Hr1G124410.12	Barley	plastid	65.98	63.98
TraesCS5B01G559100.1	Wheat	cytosol, plastid	65.98	63.98
KRG96825	Soybean	cytosol	63.28	63.81
Bra031654.1-P	Field mustard	plastid	64.52	63.73
KRH68539	Soybean	cytosol	62.86	63.39
KRG92868	Soybean	cytosol, plastid	62.24	61.73
KRH33916	Soybean	cytosol	28.84	58.65
PGSC0003DMT400027641	Potato	cytosol	46.68	55.97
Zm00001d034896_P003	Maize	golgi, plasma membrane	62.24	55.56
GSMUA_AchrUn_...	Banana	cytosol	15.98	47.53

Protein Annotations

EntrezGene:100810976	MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	EMBL:ACUP02004716
InterPro:AMPK1_CBM	InterPro:CBS_dom	EnsemblPlantsGene:GLYMA_07G249700	InterPro:IPR000644	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	UniProt:K7L3Q8	EnsemblPlants:KRH50894	ProteinID:KRH50894	ProteinID:KRH50894.1	ProteinID:KRH50895.1
PFAM:PF00571	PFAM:PF16561	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116
SUPFAM:SSF54631	SUPFAM:SSF81296	UniParc:UPI00023C5E97	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:42764703..42773409

Molecular Weight (calculated)

53519.6 Da

IEP (calculated)

6.146

GRAVY (calculated)

0.057

Length

482 amino acids

Sequence
(BLAST)

001: MFSPSMDSAR DASGVAGTVL IPMRFVWPYG GRSVYLSGSF TRWSELLQMS PVEGCPTVFQ VIHSLIPGHH QYKFFVDGEW RHDDHQPCVS GEYGIVNTVL
101: LATDPNIVPV LTPEIVSGSN MDVDNEAFRC MVRLTDSTLN NVLLPRISDV DIQTSRQRIS AFLSMSTAYE LLPESGKVVT LDVDLPVKQA FHILHEQGIP
201: VAPLWDICKG QFVGVLSALD FILIIRELGN HGSNLTEEEL ETHTISAWKG GKWTGFTQCF IRAGPYDNLK EIAVKILQNG ISTVPIIHSE DGSFPQLLHL
301: ASLSGILKCI CRYFRNCSSS LPILQLPICA IPVGTWVPKI GESNRRPLAM LRPNASLTSA LNLLVQAQVS SIPIVDDSDS LLDIYCRSDI TALAKDRTYT
401: HINLDEMTVH QALQLGQDSY NTYELRSQRC QMCLRTDSLH KVMERLANPG VRRLVIVEAG SKRVEGIIAL SDIFNFFLGY NS

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.