Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG96825 | Soybean | cytosol | 94.14 | 94.14 |
KRG92868 | Soybean | cytosol, plastid | 73.22 | 72.02 |
VIT_14s0128g00890.t01 | Wine grape | cytosol | 72.18 | 71.58 |
PGSC0003DMT400063659 | Potato | cytosol, plastid | 70.08 | 69.36 |
AT1G09020.1 | Thale cress | cytosol, plastid | 70.5 | 69.2 |
Solyc01g099280.2.1 | Tomato | plastid | 69.87 | 69.15 |
Bra030752.1-P | Field mustard | plastid | 54.39 | 68.6 |
Bra018586.1-P | Field mustard | plastid | 62.97 | 68.56 |
KRH33916 | Soybean | cytosol | 33.89 | 68.35 |
CDY22651 | Canola | mitochondrion, plastid | 68.62 | 68.05 |
CDX95016 | Canola | plastid | 68.62 | 67.91 |
CDY31116 | Canola | plastid | 68.2 | 67.63 |
CDY06344 | Canola | mitochondrion, plastid | 68.2 | 67.63 |
CDX93522 | Canola | plastid | 68.41 | 67.56 |
CDY32146 | Canola | plastid | 67.99 | 67.43 |
Bra031654.1-P | Field mustard | plastid | 67.57 | 66.19 |
KRH12134 | Soybean | nucleus | 65.9 | 64.15 |
KRH37135 | Soybean | cytosol | 65.69 | 63.82 |
KRH50894 | Soybean | nucleus | 63.39 | 62.86 |
KRH02229 | Soybean | nucleus | 62.97 | 62.45 |
GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 22.38 | 54.87 |
Protein Annotations
EntrezGene:100814655 | MapMan:18.4.5.1.4 | Gene3D:2.60.40.10 | MapMan:27.3.1.4 | Gene3D:3.10.580.10 | EMBL:ACUP02002120 |
InterPro:AMPK1_CBM | InterPro:CBS_dom | EnsemblPlantsGene:GLYMA_03G236900 | UniProt:I1JRB8 | InterPro:IPR000644 | InterPro:IPR013783 |
InterPro:Ig-like_fold | InterPro:Ig_E-set | ProteinID:KRH68537.1 | ProteinID:KRH68538.1 | EnsemblPlants:KRH68539 | ProteinID:KRH68539 |
ProteinID:KRH68539.1 | PFAM:PF00571 | PFAM:PF16561 | PFscan:PS51371 | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF92 |
SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81296 | UniParc:UPI000233A1BC | : | : |
Description
hypothetical protein
Coordinates
chr3:+:43681875..43689620
Molecular Weight (calculated)
52840.7 Da
IEP (calculated)
6.895
GRAVY (calculated)
0.018
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MFASVADGAF EGSGVSGPFL IPQRFVWPYG GTTVFLTGSF TRWSNHIAMS PMEGCPAVFQ VVCNLMPGFH QYKFNVDGEW RHDEQQPFVN GSCGVVNTIY
101: IVREPDILPS ILNTETPGRS HMEVDNMEAN PRMTVSDLEV SRHRISVFLS THTSYDLLPE SGKVIALDIN LPVKQAFHVL YEQGISMAPL WDFCRSQFVG
201: VLSAMDFILI LKELGNHSSN LTQEQLETHT IAAWKEGKFQ QFRTLDSNGG SYPWRFVHAG PHECLKDVAL KVLQNKVSSV PIIHSSSEDG SHPQLLHLAS
301: LSGILKVICR QFKHSLSSFP ILQLPVASIP LGTWMPRVGE PNGRPLAMLM PSASLGAALS MFVQAKVSSI PIVDNNDSLL DIYSRSDITA LAKDKAYARI
401: SLDEISIHQA LLLGQDATSP YGLYNGHRCH MCLRSDSLYK VMERLANPGV RRLVAVEAGS KRVEGIISLS DVFRFLLG
101: IVREPDILPS ILNTETPGRS HMEVDNMEAN PRMTVSDLEV SRHRISVFLS THTSYDLLPE SGKVIALDIN LPVKQAFHVL YEQGISMAPL WDFCRSQFVG
201: VLSAMDFILI LKELGNHSSN LTQEQLETHT IAAWKEGKFQ QFRTLDSNGG SYPWRFVHAG PHECLKDVAL KVLQNKVSSV PIIHSSSEDG SHPQLLHLAS
301: LSGILKVICR QFKHSLSSFP ILQLPVASIP LGTWMPRVGE PNGRPLAMLM PSASLGAALS MFVQAKVSSI PIVDNNDSLL DIYSRSDITA LAKDKAYARI
401: SLDEISIHQA LLLGQDATSP YGLYNGHRCH MCLRSDSLYK VMERLANPGV RRLVAVEAGS KRVEGIISLS DVFRFLLG
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
Arabidopsis Description
SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.